Strain identifier

BacDive ID: 11709

Type strain: Yes

Species: Haemophilus pittmaniae

Strain Designation: HK 85

Variant: Isotype of BacDive ID 11710

Strain history: CIP <- 2005, CCUG <- 2004, N. Nörskov-Lauritsen, Alborg, Denmark <- M. Kilian, Aarhus, Denmark: strain HK 85

NCBI tax ID(s): 1035188 (strain), 249188 (species)

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General

@ref: 6847

BacDive-ID: 11709

DSM-Number: 17240

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Haemophilus pittmaniae HK 85 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from human saliva.

NCBI tax id

NCBI tax idMatching level
1035188strain
249188species

strain history

@refhistory
6847<- N. Norskov-Lauritsen, Aarhus Univ.; HK 85
121850CIP <- 2005, CCUG <- 2004, N. Nörskov-Lauritsen, Alborg, Denmark <- M. Kilian, Aarhus, Denmark: strain HK 85

doi: 10.13145/bacdive11709.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus pittmaniae
  • full scientific name: Haemophilus pittmaniae Nørskov-Lauritsen et al. 2005

@ref: 6847

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus pittmaniae

full scientific name: Haemophilus pittmaniae Nørskov-Lauritsen et al. 2005

strain designation: HK 85

variant: Isotype of BacDive ID 11710

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.989
121850negativeoval-shapedno

colony morphology

  • @ref: 121850

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6847HAEMOPHILUS MEDIUM (DSMZ Medium 804)yeshttps://mediadive.dsmz.de/medium/804Name: HAEMOPHILUS MEDIUM (DSMZ Medium 804) Composition: Mueller-Hinton broth 21.0 g/l Yeast extract 5.0 g/l Distilled water
38286MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121850CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
6847positivegrowth37mesophilic
38286positivegrowth37mesophilic
121850positivegrowth25-41
121850nogrowth15psychrophilic
121850nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 6847
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.994

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
121850esculin-hydrolysis4853
121850hippurate+hydrolysis606565
121850nitrate+reduction17632
121850nitrite+reduction16301
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377maltose+builds acid from17306
68377ornithine-degradation18257
68377urea-hydrolysis16199
68377tryptophan-energy source27897

antibiotic resistance

  • @ref: 121850
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
12185035581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
121850oxidase+
121850beta-galactosidase+3.2.1.23
121850alcohol dehydrogenase-1.1.1.1
121850catalase-1.11.1.6
121850gamma-glutamyltransferase+2.3.2.2
121850lysine decarboxylase-4.1.1.18
121850ornithine decarboxylase-4.1.1.17
121850urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121850-+---++-+-++-+------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121850+--------++++--------+-----++/--+---+-------------+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
6847++++---++-+--
6847-++++---++-+-
6847-++++---++-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
6847human salivaAarhusDenmarkDNKEurope56.1510.2167
121850Human, SalivaDenmarkDNKEurope1975

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Oral cavity and Airways#Saliva

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
68472Risk group (German classification)
1218502Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6847
  • description: Haemophilus pittmaniae partial 16S rRNA gene, type strain HK85
  • accession: AJ290755
  • length: 1468
  • database: ena
  • NCBI tax ID: 1035188

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haemophilus pittmaniae NCTC13334GCA_900186995completencbi249188
66792Haemophilus pittmaniae strain NCTC13334249188.3completepatric249188
66792Haemophilus pittmaniae NCTC 133342773857811completeimg249188
66792Haemophilus pittmaniae HK 85GCA_000223275contigncbi1035188

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.141no
flagellatedno93.486no
gram-positiveno98.658no
anaerobicno94.144yes
aerobicno95.219yes
halophileno53.52no
spore-formingno98.746no
thermophileno97.07yes
glucose-utilno59.351no
glucose-fermentyes52.834no

External links

@ref: 6847

culture collection no.: DSM 17240, CCUG 48703, NCTC 13334, CIP 108658

straininfo link

  • @ref: 80929
  • straininfo: 135111

literature

  • topic: Phylogeny
  • Pubmed-ID: 15653917
  • title: Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov.
  • authors: Norskov-Lauritsen N, Bruun B, Kilian M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63325-0
  • year: 2005
  • mesh: Bacterial Proteins/*genetics, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Haemophilus/*classification/genetics, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/*genetics, *Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6847Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17240)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17240
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38286Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6311
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80929Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135111.1StrainInfo: A central database for resolving microbial strain identifiers
121850Curators of the CIPCollection of Institut Pasteur (CIP 108658)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108658