Strain identifier

BacDive ID: 11695

Type strain: Yes

Species: Avibacterium avium

Culture col. no.: DSM 18557, ATCC 29546, CCM 3836, CCUG 12833, CIP 100919, NCTC 11297

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 7589

BacDive-ID: 11695

DSM-Number: 18557

keywords: animal pathogen, mesophilic, Bacteria, 16S sequence, genome sequence

description: Avibacterium avium DSM 18557 is a mesophilic animal pathogen that was isolated from infraorbital sinus of chicken.

strain history: <- CIP <- ATCC <- K. H. Hinz

doi: 10.13145/bacdive11695.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Avibacterium
  • species: Avibacterium avium
  • full scientific name: Avibacterium avium (Hinz and Kunjara 1977) Blackall et al. 2005
  • synonyms

    @refsynonym
    20215Haemophilus avium
    20215Pasteurella avium

@ref: 7589

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Avibacterium

species: Avibacterium avium

full scientific name: Avibacterium avium (Hinz and Kunjara 1977) Blackall et al. 2005

type strain: yes

Morphology

colony morphology

  • @ref: 7589
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7589HAEMOPHILUS MEDIUM (DSMZ Medium 804), needs moisture on the plateyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium804.pdf
36476MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
7589positivegrowth37mesophilic
36476positivegrowth37mesophilic

Physiology and metabolism

enzymes

@refvalueactivityec
7589catalase+1.11.1.6
7589cytochrome-c oxidase+1.9.3.1

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
7589-++/--+---+--+-
7589-++-+---+--+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
7589infraorbital sinus of chickenUSAUSANorth America
45835Chick,infraorbital sinusGermanyDEUEuropeHannover ?

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 7589
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pasteurella avium strain CCUG 12833 16S ribosomal RNA gene, partial sequenceAY3629161363ena751
7589Avibacterium avium strain NCTC 11297 16S ribosomal RNA gene, partial sequenceM750581478ena751

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Avibacterium avium NCTC 11297GCA_900454535contigncbi751
66792Avibacterium avium strain NCTC 11297 strain NCTC11297751.5wgspatric751

External links

@ref: 7589

culture collection no.: DSM 18557, ATCC 29546, CCM 3836, CCUG 12833, CIP 100919, NCTC 11297

straininfo link

@refpassport
20218http://www.straininfo.net/strains/691071
20218http://www.straininfo.net/strains/107007
20218http://www.straininfo.net/strains/153700
20218http://www.straininfo.net/strains/140988
20218http://www.straininfo.net/strains/153699
20218http://www.straininfo.net/strains/153701

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7589Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18557)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18557
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36476Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/12437
45835Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12833)https://www.ccug.se/strain?id=12833
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)