Strain identifier

BacDive ID: 11677

Type strain: Yes

Species: Actinobacillus hominis

Strain Designation: 12, P 578, P578

Strain history: CIP <- 1986, NCTC <- 1982, A. Friis-Moeller: strain 12 = P578

NCBI tax ID(s): 719 (species)

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General

@ref: 16242

BacDive-ID: 11677

DSM-Number: 22262

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped

description: Actinobacillus hominis 12 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Human, Deep-cough sputum.

NCBI tax id

  • NCBI tax id: 719
  • Matching level: species

strain history

@refhistory
16242<- CCUG {2009} <- R. Mutters, HIM
119938CIP <- 1986, NCTC <- 1982, A. Friis-Moeller: strain 12 = P578

doi: 10.13145/bacdive11677.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus hominis
  • full scientific name: Actinobacillus hominis Friis-Møller 1985

@ref: 16242

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus hominis

full scientific name: Actinobacillus hominis Friis-Møller 1985

strain designation: 12, P 578, P578

type strain: yes

Morphology

cell morphology

  • @ref: 119938
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refincubation period
470583 days
119938

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16242BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
40384MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicolayesDistilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g)
119938CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
16242positivegrowth37mesophilic
40384positivegrowth37mesophilic
119938positivegrowth25-37mesophilic
119938nogrowth15psychrophilic
119938nogrowth41thermophilic
119938nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
47058microaerophile
119938facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
119938hippurate-hydrolysis606565
119938nitrate-reduction17632
119938nitrite-reduction16301
68377D-glucose+builds acid from17634
68377D-fructose+builds acid from15824
68377maltose+builds acid from17306
68377urea+hydrolysis16199
68377tryptophan-energy source27897

antibiotic resistance

  • @ref: 119938
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11993835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
11993815688acetoin-

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease+3.5.1.5
119938oxidase-
119938beta-galactosidase+3.2.1.23
119938alcohol dehydrogenase-1.1.1.1
119938catalase+1.11.1.6
119938gamma-glutamyltransferase-2.3.2.2
119938lysine decarboxylase-4.1.1.18
119938ornithine decarboxylase-4.1.1.17
119938urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47058C12:00.612
    47058C14:022.714
    47058C16:03016
    47058C18:03.118
    47058C13:0 ISO 2OH0.513.814
    47058C14:0 3OH/C16:1 ISO I8.815.485
    47058C16:1 ω7c27.115.819
    47058C18:1 ω9c2.717.769
    47058C18:2 ω6,9c/C18:0 ANTE3.617.724
    47058unknown 14.5030.614.503
    47058unknown 9.1400.49.14
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119938-+++-+----++++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119938+---+----+++-----+---+-----++-++--+-----------+-+

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
16242++++-++++-+--
16242-++++-++++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 119938
  • sample type: Human, Deep-cough sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_91582.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_344;99_91582&stattab=map
  • Last taxonomy: Actinobacillus hominis
  • 16S sequence: L06076
  • Sequence Identity:
  • Total samples: 326
  • aquatic counts: 2
  • animal counts: 324

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
162422Risk group (German classification)
1199381Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus hominis partial 16S rRNA gene, strain P578AJ438666435ena719
20218Actinobacillus hominis strain CCUG 19800 16S ribosomal RNA gene, partial sequenceL060761485ena719
20218A.hominis 16S rRNA, V3-V4-V5 variable regions, segment 1M23306100ena719
20218A.hominis 16S rRNA, V3-V4-V5 variable regions, segment 2M23307345ena719
16242Actinobacillus hominis strain NCTC 11529 16S ribosomal RNA gene, partial sequenceAY3628901362ena719

External links

@ref: 16242

culture collection no.: DSM 22262, ATCC 49457, CCUG 19800, CIP 102631, NCTC 11529

straininfo link

  • @ref: 80897
  • straininfo: 46103

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16242Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22262)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22262
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40384Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14339
47058Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 19800)https://www.ccug.se/strain?id=19800
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80897Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46103.1StrainInfo: A central database for resolving microbial strain identifiers
119938Curators of the CIPCollection of Institut Pasteur (CIP 102631)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102631