Strain identifier

BacDive ID: 11674

Type strain: No

Species: Actinobacillus genomospecies 2

Strain Designation: F141

Strain history: <- H. Christensen <- M. Bisgaard; F141

NCBI tax ID(s): 230709 (species)

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General

@ref: 5285

BacDive-ID: 11674

DSM-Number: 14528

keywords: genome sequence, 16S sequence, aerobe, mesophilic

description: Actinobacillus genomospecies 2 F141 is an aerobe, mesophilic Proteobacterium that was isolated from Cavum oris, horse.

NCBI tax id

  • NCBI tax id: 230709
  • Matching level: species

strain history

  • @ref: 5285
  • history: <- H. Christensen <- M. Bisgaard; F141

doi: 10.13145/bacdive11674.20230509.8.1

Name and taxonomic classification

@ref: 5285

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus genomospecies 2

full scientific name: Actinobacillus genomospecies 2

strain designation: F141

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5285
  • name: COLUMBIA BLOOD AGAR (DSMZ Medium 429)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429
  • composition: Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
5285positivegrowth37mesophilic
46283positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46283
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5285+-+-+--+------------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
5285Cavum oris, horseDenmarkDNKEurope
46283Horse oral cavityDenmarkDNKEurope1981

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Oral cavity and airways#Mouth

taxonmaps

  • @ref: 69479
  • File name: preview.99_80557.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_155;97_166;98_344;99_80557&stattab=map
  • Last taxonomy: Actinobacillus
  • 16S sequence: AF247717
  • Sequence Identity:
  • Total samples: 55
  • soil counts: 2
  • animal counts: 53

Sequence information

16S sequences

  • @ref: 5285
  • description: Actinobacillus sp. F 141 16S ribosomal RNA gene, partial sequence
  • accession: AF247717
  • length: 1461
  • database: ena
  • NCBI tax ID: 157339

Genome sequences

  • @ref: 66792
  • description: Actinobacillus genomosp. 2 CCUG15571
  • accession: GCA_029773605
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 230709

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno91.957no
gram-positiveno89.234no
anaerobicno93.809yes
aerobicno70.39yes
halophileno68.908no
spore-formingno97.353no
glucose-fermentyes84.156yes
thermophileno97.067yes
glucose-utilyes77.383yes
motileno86.734no

External links

@ref: 5285

culture collection no.: DSM 14528, CCUG 15571

Reference

@idauthorscataloguedoi/urltitle
5285Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14528)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14528
46283Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15571)https://www.ccug.se/strain?id=15571
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta