Strain identifier

BacDive ID: 11671

Type strain: Yes

Species: Actinobacillus delphinicola

Strain Designation: M906/93

Strain history: CIP <- 1999, CCUG <- 1998, NCTC <- G. Foster: strain M906/93

NCBI tax ID(s): 51161 (species)

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General

@ref: 4315

BacDive-ID: 11671

DSM-Number: 11374

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Actinobacillus delphinicola M906/93 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from lung of harbor porpoise .

NCBI tax id

  • NCBI tax id: 51161
  • Matching level: species

strain history

@refhistory
4315<- NCTC <- G. Foster, M906/93
118889CIP <- 1999, CCUG <- 1998, NCTC <- G. Foster: strain M906/93

doi: 10.13145/bacdive11671.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Actinobacillus
  • species: Actinobacillus delphinicola
  • full scientific name: Actinobacillus delphinicola Foster et al. 1996

@ref: 4315

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Actinobacillus

species: Actinobacillus delphinicola

full scientific name: Actinobacillus delphinicola Foster et al. 1996

strain designation: M906/93

type strain: yes

Morphology

cell morphology

  • @ref: 118889
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 118889

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4315COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
39478MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
118889CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
118889CIP Medium 118-byeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=118-b

culture temp

@refgrowthtypetemperaturerange
4315positivegrowth37mesophilic
39478positivegrowth37mesophilic
55032positivegrowth37mesophilic
118889positivegrowth30-41
118889nogrowth15psychrophilic
118889nogrowth25mesophilic
118889nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
4315microaerophile
55032microaerophile
118889microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1188894853esculin-hydrolysis
118889606565hippurate-hydrolysis
11888917632nitrate+reduction
11888916301nitrite-reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine+degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 118889
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11888935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837735581indole-
11888915688acetoin+

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease-3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68377beta-lactamase-3.5.2.6
118889oxidase-
118889beta-galactosidase-3.2.1.23
118889alcohol dehydrogenase-1.1.1.1
118889catalase+1.11.1.6
118889gamma-glutamyltransferase-2.3.2.2
118889lysine decarboxylase-4.1.1.18
118889ornithine decarboxylase-4.1.1.17
118889urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55032-+-+-+----++--------
118889-+-+------++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
55032-++--+-++-+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciessampling dategeographic locationcountry
4315lung of harbor porpoise (Phocoena phocoena)Phocoena phocoena
55032Harbor porpoise lung,Phocoena phocoena1993Northeast Atlantic OceanAtlantic Ocean
118889Harbor porpoise, Phocoea phocoea, lung

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Aquatic mammal
#Host Body-Site#Oral cavity and airways#Lung

taxonmaps

  • @ref: 69479
  • File name: preview.99_17940.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_18;96_5185;97_6257;98_7807;99_17940&stattab=map
  • Last taxonomy: Actinobacillus delphinicola subclade
  • 16S sequence: AY362889
  • Sequence Identity:
  • Total samples: 7559
  • soil counts: 107
  • aquatic counts: 427
  • animal counts: 6925
  • plant counts: 100

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
4315yes2Risk group (German classification)
1188891Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinobacillus delphinicola strain NCTC 12870 16S ribosomal RNA gene, partial sequenceAY3628891365ena51161
20218A.delphinicola DNA for 16S ribosomal RNA (strain M906)X89378710ena51161

External links

@ref: 4315

culture collection no.: CCUG 41362, CIP 106129, NCIMB 13567, DSM 11374, NCTC 12870

straininfo link

  • @ref: 80892
  • straininfo: 43810

literature

  • topic: Phylogeny
  • Pubmed-ID: 8782671
  • title: Actinobacillus delphinicola sp. nov., a new member of the family Pasteurellaceae Pohl (1979) 1981 isolated from sea mammals.
  • authors: Foster G, Ross HM, Malnick H, Willems A, Garcia P, Reid RJ, Collins MD
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-3-648
  • year: 1996
  • mesh: Actinobacillus/*classification/genetics/isolation & purification/metabolism, Animals, Base Sequence, Cetacea/*microbiology, DNA, Bacterial, Molecular Sequence Data, Pasteurellaceae/classification/genetics/isolation & purification/metabolism, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4315Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11374)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11374
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39478Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18226
55032Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 41362)https://www.ccug.se/strain?id=41362
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80892Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43810.1StrainInfo: A central database for resolving microbial strain identifiers
118889Curators of the CIPCollection of Institut Pasteur (CIP 106129)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106129