Strain identifier
BacDive ID: 11663
Type strain: 
Species: Paenibacillus macerans
Strain Designation: WP-1
Strain history: CIP <- 2013, DSMZ, Paenibacillus thermophilus <- S.K. Tang, Yunnan Univ., Kunming, China: strain Wp-1 <- Y. Zhou
NCBI tax ID(s): 44252 (species)
version 8.1 (current version)
General
@ref: 17750
BacDive-ID: 11663
DSM-Number: 24746
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile
description: Paenibacillus macerans WP-1 is a spore-forming, thermophilic, motile bacterium that was isolated from sediment of hot spring.
NCBI tax id
- NCBI tax id: 44252
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17750 | <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; Wp-1 <- Y. Zhou |
| 67770 | S.-K. Tang WP-1. |
| 120734 | CIP <- 2013, DSMZ, Paenibacillus thermophilus <- S.K. Tang, Yunnan Univ., Kunming, China: strain Wp-1 <- Y. Zhou |
doi: 10.13145/bacdive11663.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus macerans
- full scientific name: Paenibacillus macerans (Schardinger 1905) Ash et al. 1994
synonyms
@ref synonym 20215 Bacillus macerans 20215 Aerobacillus macerans 20215 Paenibacillus thermophilus
@ref: 17750
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus macerans
full scientific name: Paenibacillus macerans (Schardinger 1905) Ash et al. 1994 emend. Kobayashi et al. 2019
strain designation: WP-1
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.771 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 17750 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 120734 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17750 | positive | growth | 45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17750 | sediment of hot spring | Fujian province | China | CHN | Asia |
| 67770 | Sediment sample from a hot spring in Fujian Province | China | CHN | Asia | |
| 120734 | Environment, Sediment of hot spring | Fujian | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) | |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_19676.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2906;97_4677;98_6009;99_19676&stattab=map
- Last taxonomy: Paenibacillus macerans subclade
- 16S sequence: JQ824133
- Sequence Identity:
- Total samples: 22
- soil counts: 10
- animal counts: 10
- plant counts: 2
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 17750 | 1 | Risk group (German classification) |
| 120734 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 17750
- description: Paenibacillus thermophilus strain WP-1 16S ribosomal RNA gene, partial sequence
- accession: JQ824133
- length: 1464
- database: ena
- NCBI tax ID: 1181891
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus thermophilus strain DSM 24746 | 1181891.3 | wgs | patric | 44252 |
| 66792 | Paenibacillus thermophilus strain JCM 17693 | 1181891.4 | wgs | patric | 44252 |
| 67770 | Paenibacillus macerans DSM 24746 | GCA_003851105 | scaffold | ncbi | 44252 |
| 67770 | Paenibacillus macerans JCM 17693 | GCA_003864435 | scaffold | ncbi | 44252 |
GC content
- @ref: 17750
- GC-content: 52.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 88.626 | no |
| gram-positive | yes | 77.32 | no |
| anaerobic | no | 97.064 | no |
| aerobic | yes | 76.763 | no |
| halophile | no | 89.154 | no |
| spore-forming | yes | 96.042 | no |
| flagellated | yes | 69.265 | no |
| thermophile | no | 99.242 | no |
| glucose-util | yes | 89.3 | no |
| glucose-ferment | no | 79.232 | no |
External links
@ref: 17750
culture collection no.: DSM 24746, CCTCC AB 2011115, CIP 110636, JCM 17693
straininfo link
- @ref: 80886
- straininfo: 406040
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22684782 | Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China. | Zhou Y, Gao S, Wei DQ, Yang LL, Huang X, He J, Zhang YJ, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9755-6 | 2012 | Aerobiosis, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid, Fatty Acids/analysis, Flagella/physiology, Geologic Sediments/*microbiology, *Hot Springs, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 30540240 | Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994. | Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003160 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Paenibacillus/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17750 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24746) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24746 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 80886 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406040.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 120734 | Curators of the CIP | Collection of Institut Pasteur (CIP 110636) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110636 |