Strain identifier
BacDive ID: 11662
Type strain:
Species: Paenibacillus beijingensis
Strain Designation: 7188
Strain history: <- M. Gao, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; strain 7188
NCBI tax ID(s): 1126833 (species)
General
@ref: 17816
BacDive-ID: 11662
DSM-Number: 24997
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus beijingensis 7188 is a spore-forming, mesophilic, motile bacterium that was isolated from rhizospere soil of jujube.
NCBI tax id
- NCBI tax id: 1126833
- Matching level: species
strain history
- @ref: 17816
- history: <- M. Gao, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; strain 7188
doi: 10.13145/bacdive11662.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus beijingensis
- full scientific name: Paenibacillus beijingensis Gao et al. 2012
@ref: 17816
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus beijingensis
full scientific name: Paenibacillus beijingensis Gao et al. 2012
strain designation: 7188
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 96.287 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 17816
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 17816
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 17816
- sample type: rhizospere soil of jujube
- geographic location: Wangsiying, Beijing
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_2813.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_1496;97_1785;98_2182;99_2813&stattab=map
- Last taxonomy: Paenibacillus beijingensis subclade
- 16S sequence: JN408292
- Sequence Identity:
- Total samples: 3416
- soil counts: 2103
- aquatic counts: 246
- animal counts: 787
- plant counts: 280
Sequence information
16S sequences
- @ref: 17816
- description: Paenibacillus beijingensis strain 7188 16S ribosomal RNA gene, partial sequence
- accession: JN408292
- length: 1515
- database: ena
- NCBI tax ID: 1126833
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus beijingensis DSM 24997 | GCA_000961095 | complete | ncbi | 1126833 |
66792 | Paenibacillus beijingensis strain DSM 24997 | 1126833.4 | complete | patric | 1126833 |
66792 | Paenibacillus beijingensis DSM 24997 | 2627854173 | complete | img | 1126833 |
GC content
- @ref: 17816
- GC-content: 60.3
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 86.826 | no |
flagellated | yes | 83.875 | no |
gram-positive | yes | 91.35 | no |
anaerobic | no | 97.542 | no |
aerobic | yes | 87.116 | no |
halophile | no | 93.328 | no |
spore-forming | yes | 95.499 | no |
glucose-util | yes | 90.438 | no |
thermophile | no | 99.401 | no |
glucose-ferment | no | 86.856 | no |
External links
@ref: 17816
culture collection no.: DSM 24997, ACCC 03082
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22763811 | Paenibacillus beijingensis sp. nov., a novel nitrogen-fixing species isolated from jujube garden soil. | Gao M, Xie LQ, Wang YX, Chen J, Xu J, Zhang XX, Sui XH, Gao JL, Sun JG | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9767-2 | 2012 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, *Nitrogen Fixation, Paenibacillus/classification/genetics/*isolation & purification/*metabolism, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysis, Ziziphus/*microbiology | Genetics |
Genetics | 25937453 | Complete genome sequence of Paenibacillus beijingensis 7188(T) (=DSM 24997(T)), a novel rhizobacterium from jujube garden soil. | Kwak Y, Shin JH | J Biotechnol | 10.1016/j.jbiotec.2015.04.015 | 2015 | Genome, Bacterial/*genetics, Molecular Sequence Data, Paenibacillus/*genetics, Soil Microbiology | |
Enzymology | 28399167 | Characterization of the Paenibacillus beijingensis DSM 24997 GtfD and its glucan polymer products representing a new glycoside hydrolase 70 subfamily of 4,6-alpha-glucanotransferase enzymes. | Gangoiti J, Lamothe L, van Leeuwen SS, Vafiadi C, Dijkhuizen L | PLoS One | 10.1371/journal.pone.0172622 | 2017 | Amylose/metabolism, Animals, Azotobacter/enzymology/genetics, Bacterial Proteins/chemistry/genetics/isolation & purification/*metabolism, Chromatography, Escherichia coli, Evolution, Molecular, Glucans/*metabolism, Glycogen Debranching Enzyme System/chemistry/genetics/isolation & purification/*metabolism, Humans, Magnetic Resonance Spectroscopy, Methylation, Paenibacillus/*enzymology/genetics, Phylogeny, Protein Domains, Rats, Recombinant Proteins/metabolism, Substrate Specificity | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
17816 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24997) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24997 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |