Strain identifier

BacDive ID: 11645

Type strain: Yes

Species: Paenibacillus aestuarii

Strain Designation: CJ25

Strain history: C.-J. Cha CJ25.

NCBI tax ID(s): 516965 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17410

BacDive-ID: 11645

DSM-Number: 23861

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus aestuarii CJ25 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sediment of estuarine wetland.

NCBI tax id

  • NCBI tax id: 516965
  • Matching level: species

strain history

@refhistory
17410<- JCM <- C.-J. Cha, Chung-Ang Univ., Anseong, Republic of Korea
67770C.-J. Cha CJ25.

doi: 10.13145/bacdive11645.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus aestuarii
  • full scientific name: Paenibacillus aestuarii Bae et al. 2010

@ref: 17410

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus aestuarii

full scientific name: Paenibacillus aestuarii Bae et al. 2010

strain designation: CJ25

type strain: yes

Morphology

cell morphology

  • @ref: 29359
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29359
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17410
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17410positivegrowth30mesophilic
29359positiveoptimum33.5mesophilic
67770positivegrowth30mesophilic

culture pH

  • @ref: 29359
  • ability: positive
  • type: optimum
  • pH: 7

Physiology and metabolism

oxygen tolerance

  • @ref: 29359
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29359
  • spore formation: yes

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29359581435-dehydro-D-gluconate+carbon source
2935922599arabinose+carbon source
2935917057cellobiose+carbon source
2935928260galactose+carbon source
2935917234glucose+carbon source
2935928087glycogen+carbon source
2935917716lactose+carbon source
2935917306maltose+carbon source
2935929864mannitol+carbon source
2935928053melibiose+carbon source
2935916634raffinose+carbon source
2935917814salicin+carbon source
2935917992sucrose+carbon source
2935927082trehalose+carbon source
2935917151xylitol+carbon source
2935918222xylose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17410sediment of estuarine wetlandHan RiverRepublic of KoreaKORAsia
67770Sediment of the estuarine wetland of the Han RiverRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Wetland (Swamp)

taxonmaps

  • @ref: 69479
  • File name: preview.99_26651.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_7773;97_9339;98_11461;99_26651&stattab=map
  • Last taxonomy: Paenibacillus aestuarii subclade
  • 16S sequence: EU570250
  • Sequence Identity:
  • Total samples: 944
  • soil counts: 676
  • aquatic counts: 81
  • animal counts: 20
  • plant counts: 167

Safety information

risk assessment

  • @ref: 17410
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17410
  • description: Paenibacillus aestuarii strain CJ25 16S ribosomal RNA gene, partial sequence
  • accession: EU570250
  • length: 1417
  • database: ena
  • NCBI tax ID: 516965

Genome sequences

  • @ref: 66792
  • description: Paenibacillus aestuarii CJ25
  • accession: GCA_027789125
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 516965

GC content

@refGC-contentmethod
1741050high performance liquid chromatography (HPLC)
2935950

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.156yes
flagellatedyes83.45no
gram-positiveyes67.773no
anaerobicno98.558yes
aerobicyes83.606no
halophileno96.228no
spore-formingyes91.604yes
glucose-fermentno90.598no
thermophileno99.201yes
glucose-utilyes91.098no

External links

@ref: 17410

culture collection no.: DSM 23861, JCM 15521, KACC 13125, KCTC 13753

straininfo link

  • @ref: 80869
  • straininfo: 402648

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19654345Paenibacillus aestuarii sp. nov., isolated from an estuarine wetland.Bae JY, Kim KY, Kim JH, Lee K, Cho JC, Cha CJInt J Syst Evol Microbiol10.1099/ijs.0.011544-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, WetlandsMetabolism
Phylogeny27959785Paenibacillus eucommiae sp. nov., isolated from a traditional Chinese medicinal herbal plant, Eucommia ulmoides Oliver.Fang XM, Su J, Wang H, Zhang T, Zhao LL, Liu HY, Ma BP, Zhang YQ, Yu LYInt J Syst Evol Microbiol10.1099/ijsem.0.0017302017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Eucommiaceae/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17410Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23861)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23861
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29359Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2577028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80869Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402648.1StrainInfo: A central database for resolving microbial strain identifiers