Strain identifier
BacDive ID: 11645
Type strain:
Species: Paenibacillus aestuarii
Strain Designation: CJ25
Strain history: C.-J. Cha CJ25.
NCBI tax ID(s): 516965 (species)
General
@ref: 17410
BacDive-ID: 11645
DSM-Number: 23861
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Paenibacillus aestuarii CJ25 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sediment of estuarine wetland.
NCBI tax id
- NCBI tax id: 516965
- Matching level: species
strain history
@ref | history |
---|---|
17410 | <- JCM <- C.-J. Cha, Chung-Ang Univ., Anseong, Republic of Korea |
67770 | C.-J. Cha CJ25. |
doi: 10.13145/bacdive11645.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus aestuarii
- full scientific name: Paenibacillus aestuarii Bae et al. 2010
@ref: 17410
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus aestuarii
full scientific name: Paenibacillus aestuarii Bae et al. 2010
strain designation: CJ25
type strain: yes
Morphology
cell morphology
- @ref: 29359
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29359
- production: no
Culture and growth conditions
culture medium
- @ref: 17410
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17410 | positive | growth | 30 | mesophilic |
29359 | positive | optimum | 33.5 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
culture pH
- @ref: 29359
- ability: positive
- type: optimum
- pH: 7
Physiology and metabolism
oxygen tolerance
- @ref: 29359
- oxygen tolerance: aerobe
spore formation
- @ref: 29359
- spore formation: yes
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29359 | 58143 | 5-dehydro-D-gluconate | + | carbon source |
29359 | 22599 | arabinose | + | carbon source |
29359 | 17057 | cellobiose | + | carbon source |
29359 | 28260 | galactose | + | carbon source |
29359 | 17234 | glucose | + | carbon source |
29359 | 28087 | glycogen | + | carbon source |
29359 | 17716 | lactose | + | carbon source |
29359 | 17306 | maltose | + | carbon source |
29359 | 29864 | mannitol | + | carbon source |
29359 | 28053 | melibiose | + | carbon source |
29359 | 16634 | raffinose | + | carbon source |
29359 | 17814 | salicin | + | carbon source |
29359 | 17992 | sucrose | + | carbon source |
29359 | 27082 | trehalose | + | carbon source |
29359 | 17151 | xylitol | + | carbon source |
29359 | 18222 | xylose | + | carbon source |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
17410 | sediment of estuarine wetland | Han River | Republic of Korea | KOR | Asia |
67770 | Sediment of the estuarine wetland of the Han River | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Estuary |
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Wetland (Swamp) |
taxonmaps
- @ref: 69479
- File name: preview.99_26651.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_7773;97_9339;98_11461;99_26651&stattab=map
- Last taxonomy: Paenibacillus aestuarii subclade
- 16S sequence: EU570250
- Sequence Identity:
- Total samples: 944
- soil counts: 676
- aquatic counts: 81
- animal counts: 20
- plant counts: 167
Safety information
risk assessment
- @ref: 17410
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17410
- description: Paenibacillus aestuarii strain CJ25 16S ribosomal RNA gene, partial sequence
- accession: EU570250
- length: 1417
- database: ena
- NCBI tax ID: 516965
Genome sequences
- @ref: 66792
- description: Paenibacillus aestuarii CJ25
- accession: GCA_027789125
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 516965
GC content
@ref | GC-content | method |
---|---|---|
17410 | 50 | high performance liquid chromatography (HPLC) |
29359 | 50 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 89.156 | yes |
flagellated | yes | 83.45 | no |
gram-positive | yes | 67.773 | no |
anaerobic | no | 98.558 | yes |
aerobic | yes | 83.606 | no |
halophile | no | 96.228 | no |
spore-forming | yes | 91.604 | yes |
glucose-ferment | no | 90.598 | no |
thermophile | no | 99.201 | yes |
glucose-util | yes | 91.098 | no |
External links
@ref: 17410
culture collection no.: DSM 23861, JCM 15521, KACC 13125, KCTC 13753
straininfo link
- @ref: 80869
- straininfo: 402648
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19654345 | Paenibacillus aestuarii sp. nov., isolated from an estuarine wetland. | Bae JY, Kim KY, Kim JH, Lee K, Cho JC, Cha CJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.011544-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Wetlands | Metabolism |
Phylogeny | 27959785 | Paenibacillus eucommiae sp. nov., isolated from a traditional Chinese medicinal herbal plant, Eucommia ulmoides Oliver. | Fang XM, Su J, Wang H, Zhang T, Zhao LL, Liu HY, Ma BP, Zhang YQ, Yu LY | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001730 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Eucommiaceae/*microbiology, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
17410 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23861) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23861 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29359 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25770 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
80869 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402648.1 | StrainInfo: A central database for resolving microbial strain identifiers |