Strain identifier

BacDive ID: 11637

Type strain: Yes

Species: Paenibacillus thailandensis

Strain Designation: S3-4A

Strain history: <- S Tanasupawat, Chulalongkorn Univ., Thailand

NCBI tax ID(s): 393250 (species)

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General

@ref: 16588

BacDive-ID: 11637

DSM-Number: 22866

keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus thailandensis S3-4A is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 393250
  • Matching level: species

strain history

@refhistory
16588<- KCTC; KCTC 13043
67771<- S Tanasupawat, Chulalongkorn Univ., Thailand

doi: 10.13145/bacdive11637.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus thailandensis
  • full scientific name: Paenibacillus thailandensis Khianngam et al. 2009

@ref: 16588

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus thailandensis

full scientific name: Paenibacillus thailandensis Khianngam et al. 2009

strain designation: S3-4A

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
28883positive4-12 µm0.8-1.2 µmrod-shapedyes
67771rod-shapedyesperitrichous
67771positive

pigmentation

  • @ref: 28883
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16588XYLAN MEDIUM (DSMZ Medium 1235)yeshttps://mediadive.dsmz.de/medium/1235Name: XYLAN MEDIUM (DSMZ Medium 1235) Composition: Agar 15.0 g/l Xylan 10.0 g/l Peptone 5.0 g/l K2HPO4 4.0 g/l MgSO4 x 7 H2O 1.0 g/l Yeast extract 1.0 g/l KCl 0.2 g/l FeSO4 x 7 H2O 0.02 g/l Distilled water
16588CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 Distilled water

culture temp

@refgrowthtypetemperature
16588positivegrowth30
28883positivegrowth20-55
28883positiveoptimum37
67771positivegrowth37

culture pH

@refabilitytypepHPH range
28883positivegrowth7-9alkaliphile
28883positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28883facultative anaerobe
67771aerobe

spore formation

@refspore formationtype of spore
28883yes
67771yesendospore

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2888315963ribitol+carbon source
2888322599arabinose+carbon source
2888318403L-arabitol+carbon source
2888317057cellobiose+carbon source
2888328757fructose+carbon source
2888333984fucose+carbon source
2888328260galactose+carbon source
2888324265gluconate+carbon source
2888317234glucose+carbon source
2888317754glycerol+carbon source
2888328087glycogen+carbon source
2888317716lactose+carbon source
2888317306maltose+carbon source
2888329864mannitol+carbon source
2888337684mannose+carbon source
2888328053melibiose+carbon source
28883506227N-acetylglucosamine+carbon source
2888316634raffinose+carbon source
2888326546rhamnose+carbon source
2888333942ribose+carbon source
2888317814salicin+carbon source
2888330911sorbitol+carbon source
2888327082trehalose+carbon source
2888317151xylitol+carbon source
2888318222xylose+carbon source
288834853esculin+hydrolysis

enzymes

@refvalueactivityec
28883catalase+1.11.1.6
28883cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16588soil sampleNan province, Muang districtThailandTHAAsia
67771From soilThailandTHAAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_82272.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_7772;97_9338;98_11460;99_82272&stattab=map
  • Last taxonomy: Paenibacillus thailandensis subclade
  • 16S sequence: AB265205
  • Sequence Identity:
  • Total samples: 22
  • soil counts: 6
  • aquatic counts: 4
  • animal counts: 6
  • plant counts: 6

Safety information

risk assessment

  • @ref: 16588
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16588
  • description: Paenibacillus thailandensis gene for 16S rRNA, partial sequence
  • accession: AB265205
  • length: 1485
  • database: nuccore
  • NCBI tax ID: 393250

GC content

  • @ref: 16588
  • GC-content: 52.7

External links

@ref: 16588

culture collection no.: DSM 22866, KCTC 13043, PCU 275, TISTR 1827

straininfo link

  • @ref: 80862
  • straininfo: 399749

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19244442Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil.Khianngam S, Akaracharanya A, Tanasupawat S, Lee KC, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.000406-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/isolation & purification, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/*enzymology/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/physiology, Thailand, Xylosidases/*biosynthesisEnzymology
Phylogeny20228214Paenibacillus chungangensis sp. nov., isolated from a tidal-flat sediment.Park MH, Traiwan J, Jung MY, Nam YS, Jeong JH, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.021832-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Geologic Sediments/microbiology, Lipids/analysis, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, *Water MicrobiologyGenetics
Phylogeny26133115Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.Han TY, Tong XM, Wang YW, Wang HM, Chen XR, Kong DL, Guo X, Ruan ZYAntonie Van Leeuwenhoek10.1007/s10482-015-0521-42015Aerobiosis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, *Populus, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny27129367Paenibacillus arachidis sp. nov., isolated from groundnut seeds.Sadaf K, Tushar L, Nirosha P, Podile AR, Sasikala C, Ramana CVInt J Syst Evol Microbiol10.1099/ijsem.0.0011242016Arachis/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seeds/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny31702533Paenibacillus protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.Heo J, Kim SJ, Kim JS, Hong SB, Kwon SWInt J Syst Evol Microbiol10.1099/ijsem.0.0038602020Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Coleoptera/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Larva/microbiology, Paenibacillus/*classification/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16588Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22866)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22866
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28883Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2532328776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80862Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399749.1StrainInfo: A central database for resolving microbial strain identifiers