Strain identifier

BacDive ID: 11623

Type strain: Yes

Species: Paenibacillus tylopili

Strain Designation: MK2

Strain history: <- N. Kuisiene, Vilnus University, Lithuania; MK2

NCBI tax ID(s): 421768 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7788

BacDive-ID: 11623

DSM-Number: 18927

keywords: 16S sequence, Bacteria, mesophilic

description: Paenibacillus tylopili MK2 is a mesophilic bacterium that was isolated from mycorhizosphere of Tylophilus felleus.

NCBI tax id

  • NCBI tax id: 421768
  • Matching level: species

strain history

  • @ref: 7788
  • history: <- N. Kuisiene, Vilnus University, Lithuania; MK2

doi: 10.13145/bacdive11623.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus tylopili
  • full scientific name: Paenibacillus tylopili Kuisiene et al. 2008

@ref: 7788

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus tylopili

full scientific name: Paenibacillus tylopili Kuisiene et al. 2008

strain designation: MK2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7788
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 7788
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7788
  • sample type: mycorhizosphere of Tylophilus felleus
  • host species: Tylophilus felleus
  • country: Lithuania
  • origin.country: LTU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Fungi#Mushroom
#Host#Fungi#Mycorrhiza
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_197.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_141;97_152;98_170;99_197&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: EF206295
  • Sequence Identity:
  • Total samples: 5070
  • soil counts: 2237
  • aquatic counts: 297
  • animal counts: 665
  • plant counts: 1871

Sequence information

16S sequences

  • @ref: 7788
  • description: Paenibacillus tylopili strain MK2 16S ribosomal RNA gene, partial sequence
  • accession: EF206295
  • length: 1472
  • database: ena
  • NCBI tax ID: 421768

GC content

  • @ref: 7788
  • GC-content: 44.3

External links

@ref: 7788

culture collection no.: DSM 18927, LMG 23975

literature

  • topic: Phylogeny
  • Pubmed-ID: 19085079
  • title: Paenibacillus tylopili sp.nov., a chitinolytic bacterium isolated from the mycorhizosphere of Tylopilus felleus.
  • authors: Kuisiene N, Raugalas J, Sproer C, Kroppenstedt RM, Stuknyte M, Chitavichius D
  • journal: Folia Microbiol (Praha)
  • DOI: 10.1007/s12223-008-0066-2
  • year: 2008
  • mesh: Anaerobiosis, Bacterial Typing Techniques, Basidiomycota/*growth & development, Chitin/*metabolism, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
7788Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18927)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18927
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta