Strain identifier

BacDive ID: 11619

Type strain: Yes

Species: Paenibacillus cellulosilyticus

Strain history: CIP <- 2007, CECT <- 2004, R. Rivas, Univ. de Salamance, Spain: strain PALXIL08

NCBI tax ID(s): 375489 (species)

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General

@ref: 15654

BacDive-ID: 11619

DSM-Number: 21372

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile

description: Paenibacillus cellulosilyticus DSM 21372 is a spore-forming, mesophilic, motile bacterium that was isolated from bract phyllosphere of Phoenix dactylifera.

NCBI tax id

  • NCBI tax id: 375489
  • Matching level: species

strain history

@refhistory
15654<- LMG <-R. Rivas; PALXIL08
117242CIP <- 2007, CECT <- 2004, R. Rivas, Univ. de Salamance, Spain: strain PALXIL08

doi: 10.13145/bacdive11619.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus cellulosilyticus
  • full scientific name: Paenibacillus cellulosilyticus Rivas et al. 2006

@ref: 15654

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus cellulosilyticus

full scientific name: Paenibacillus cellulosilyticus Rivas et al. 2006

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.323
69480100positive
117242yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15654CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
15654TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
37753Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
117242CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
117242CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
15654positivegrowth30mesophilic
37753positivegrowth25mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

enzymes

  • @ref: 117242
  • value: oxidase
  • activity: -

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic location
15654bract phyllosphere of Phoenix dactyliferaPhoenix dactyliferaSpainESPEurope
117242Environment, Bract phyllosphere, Phoenix dactyliferaSpainESPEuropePalma de Mallorca

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Leaf (Phyllosphere)

taxonmaps

  • @ref: 69479
  • File name: preview.99_159987.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_2361;97_18918;98_23586;99_159987&stattab=map
  • Last taxonomy: Paenibacillus cellulosilyticus
  • 16S sequence: DQ407282
  • Sequence Identity:
  • Total samples: 24
  • soil counts: 20
  • aquatic counts: 1
  • animal counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
156541Risk group (German classification)
1172421Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15654
  • description: Paenibacillus cellulosilyticus strain PALXIL08 16S ribosomal RNA gene, partial sequence
  • accession: DQ407282
  • length: 1546
  • database: ena
  • NCBI tax ID: 375489

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus cellulosilyticus CECT 5696GCA_003182255scaffoldncbi375489
66792Paenibacillus cellulosilyticus strain CECT 5696375489.3wgspatric375489
66792Paenibacillus cellulosilyticus CECT 56962770939575draftimg375489

GC content

  • @ref: 15654
  • GC-content: 51

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedyes79.38no
gram-positiveyes75.483no
anaerobicno99.225no
halophileno97.455no
spore-formingyes95.909no
glucose-utilyes91.009no
aerobicyes89.512no
thermophileno99.716no
motileyes82.625no
glucose-fermentno90.157no

External links

@ref: 15654

culture collection no.: DSM 21372, CECT 5696, LMG 22232, PALXIL 08, CIP 109523

straininfo link

  • @ref: 80845
  • straininfo: 129432

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17158977Paenibacillus cellulosilyticus sp. nov., a cellulolytic and xylanolytic bacterium isolated from the bract phyllosphere of Phoenix dactylifera.Rivas R, Garcia-Fraile P, Mateos PF, Martinez-Molina E, Velazquez EInt J Syst Evol Microbiol10.1099/ijs.0.64480-02006Arecaceae/*microbiology, Bacteria/*classification/genetics/isolation & purification, Base Composition, Cellulose/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Molecular Sequence Data, Phenotype, Phylogeny, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xylans/*metabolismMetabolism
Phylogeny22752902Paenibacillus xylaniclasticus sp. nov., a xylanolytic-cellulolytic bacterium isolated from sludge in an anaerobic digester.Tachaapaikoon C, Tanasupawat S, Pason P, Sornyotha S, Waeonukul R, Kyu KL, Ratanakhanokchai KJ Microbiol10.1007/s12275-012-1480-32012Aerobiosis, Anaerobiosis, Ananas/metabolism, Base Composition, Cellulose/*metabolism, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/metabolism, Peptidoglycan/chemistry, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Spores, Bacterial/cytology, Temperature, Xylans/*metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15654Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21372)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21372
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37753Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7276
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80845Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID129432.1StrainInfo: A central database for resolving microbial strain identifiers
117242Curators of the CIPCollection of Institut Pasteur (CIP 109523)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109523