Strain identifier

BacDive ID: 11575

Type strain: Yes

Species: Paenibacillus anaericanus

Strain Designation: MH21

Strain history: CIP <- 2007, DSMZ <- M. Horn, Bayreuth Univ., Bayreuth, Germany: strain MH21

NCBI tax ID(s): 170367 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6140

BacDive-ID: 11575

DSM-Number: 15890

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-negative, motile, rod-shaped

description: Paenibacillus anaericanus MH21 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from earthworm gut.

NCBI tax id

  • NCBI tax id: 170367
  • Matching level: species

strain history

@refhistory
6140<- M. Horn; MH21
116369CIP <- 2007, DSMZ <- M. Horn, Bayreuth Univ., Bayreuth, Germany: strain MH21

doi: 10.13145/bacdive11575.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus anaericanus
  • full scientific name: Paenibacillus anaericanus Horn et al. 2005
  • synonyms

    • @ref: 20215
    • synonym: Paenibacillus ginsengisoli

@ref: 6140

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus anaericanus

full scientific name: Paenibacillus anaericanus Horn et al. 2005 emend. Kim et al. 2011

strain designation: MH21

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31407negative3.5 µm0.75 µmrod-shapedyes
69480yes97.877
69480positive100
116369rod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6140NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Soil extract 500.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36815MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
116369CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
6140positivegrowth30mesophilic
31407positivegrowth5.0-40
31407positiveoptimum32.5mesophilic
36815positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31407positivegrowth5.8-8.5alkaliphile
31407positiveoptimum7.7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31407facultative anaerobe
116369facultative anaerobe

spore formation

@refspore formationconfidence
31407yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
31407NaClpositivegrowth0.0-2.0 %
31407NaClpositiveoptimum1 %

observation

  • @ref: 31407
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3140722599arabinose+carbon source
3140717057cellobiose+carbon source
3140728757fructose+carbon source
3140717234glucose+carbon source
3140717754glycerol+carbon source
3140717716lactose+carbon source
3140717306maltose+carbon source
3140729864mannitol+carbon source
3140737684mannose+carbon source
31407506227N-acetylglucosamine+carbon source
3140716634raffinose+carbon source
3140718222xylose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11636917632nitrate-reduction
11636916301nitrite-reduction

metabolite production

  • @ref: 116369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31407catalase+1.11.1.6
116369oxidase+
116369catalase+1.11.1.6
116369urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116369--++---------+------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116369-----------+---------+----+++--+---++------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
6140earthworm (Aporrectodea caliginosa) gutAporrectodea caliginosaBavaria, BayreuthGermanyDEUEurope
116369Animal, Gut of earthworm, Aporrectodea caliginosaBayreuthGermanyDEUEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Annelida

taxonmaps

  • @ref: 69479
  • File name: preview.99_82263.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_18589;97_22986;98_28980;99_82263&stattab=map
  • Last taxonomy: Paenibacillus anaericanus
  • 16S sequence: FN673694
  • Sequence Identity:
  • Total samples: 63
  • soil counts: 45
  • aquatic counts: 3
  • animal counts: 12
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61401Risk group (German classification)
1163691Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus anaericanus partial 16S rRNA gene, strain DSM 15890FN6736941475ena170367
6140Earthworm gut bacterium MH21 partial 16S rRNA geneAJ3189091512ena170367

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus anaericanus DSM 15890GCA_003994475scaffoldncbi170367
66792Paenibacillus anaericanus strain DSM 15890170367.3wgspatric170367
66792Paenibacillus anaericanus DSM 158902916373010draftimg170367

GC content

  • @ref: 6140
  • GC-content: 42.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes87.511yes
flagellatedyes77.136no
gram-positiveyes83.034no
anaerobicno96.411no
aerobicyes52.952yes
halophileno94.184yes
spore-formingyes96.559no
thermophileno99.678yes
glucose-utilyes84.019no
glucose-fermentno83.289no

External links

@ref: 6140

culture collection no.: DSM 15890, ATCC BAA 844, CIP 109447, KCTC 13749

straininfo link

  • @ref: 80803
  • straininfo: 138998

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879265Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa.Horn MA, Ihssen J, Matthies C, Schramm A, Acker G, Drake HLInt J Syst Evol Microbiol10.1099/ijs.0.63484-02005Aerobiosis, Anaerobiosis, Animals, Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/cytology/isolation & purification/physiology, Cytochromes c/isolation & purification, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Digestive System/microbiology, Endospore-Forming Bacteria/*classification/cytology/isolation & purification/physiology, Flavobacterium/*classification/cytology/isolation & purification/physiology, Genes, rRNA, Gentian Violet, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nitrates/metabolism, Nitrogen/metabolism, Nitrous Oxide/*metabolism, Oligochaeta/*microbiology, Oxidation-Reduction, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TemperatureEnzymology
Phylogeny17043912Paenibacillus ginsengisoli sp. nov., a novel bacterium isolated from soil of a ginseng field in Pocheon Province, South Korea.Lee M, Ten LN, Baek SH, Im WT, Aslam Z, Lee STAntonie Van Leeuwenhoek10.1007/s10482-006-9102-x2007Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Bacteria/chemistry/*classification/*isolation & purification/physiology, Korea, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Oxidoreductases/analysis, Panax, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyEnzymology
Phylogeny20870883Reclassification of Paenibacillus ginsengisoli as a later heterotypic synonym of Paenibacillus anaericanus.Kim KK, Lee KC, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.025650-02010Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny24827707Paenibacillus selenii sp. nov., isolated from selenium mineral soil.Xiang W, Wang G, Wang Y, Yao R, Zhang F, Wang R, Wang D, Zheng SInt J Syst Evol Microbiol10.1099/ijs.0.063701-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Selenium, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6140Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15890)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15890
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31407Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127716
36815Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7191
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80803Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138998.1StrainInfo: A central database for resolving microbial strain identifiers
116369Curators of the CIPCollection of Institut Pasteur (CIP 109447)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109447