Strain identifier
BacDive ID: 1157
Type strain: 
Species: Bacillus subtilis
Strain Designation: S 237
Strain history: <- OUT, 8424 <- T. Seki, S 237
NCBI tax ID(s): 1423 (species)
version 9.3 (current version)
General
@ref: 502
BacDive-ID: 1157
DSM-Number: 1090
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Bacillus subtilis S 237 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1423
- Matching level: species
strain history
- @ref: 502
- history: <- OUT, 8424 <- T. Seki, S 237
doi: 10.13145/bacdive1157.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus subtilis
- full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio subtilis
@ref: 502
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus subtilis
full scientific name: Bacillus subtilis (Ehrenberg 1835) Cohn 1872
strain designation: S 237
type strain: no
Culture and growth conditions
culture medium
- @ref: 502
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 502
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125438
- spore formation: yes
- confidence: 95.341
Isolation, sampling and environmental information
isolation
- @ref: 502
- sample type: soil
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 502
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacillus subtilis DSM 1090
- accession: GCA_029537155
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1423
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 83.002 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.378 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 71.527 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 95.341 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.06 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 87.402 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 78.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 74.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 80.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 66 |
External links
@ref: 502
culture collection no.: DSM 1090, OUT 8424
straininfo link
- @ref: 70828
- straininfo: 47324
literature
- topic: Metabolism
- Pubmed-ID: 25158834
- title: Evaluation of different Bacillus strains in respect of their ability to produce Surfactin in a model fermentation process with integrated foam fractionation.
- authors: Willenbacher J, Zwick M, Mohr T, Schmid F, Syldatk C, Hausmann R
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-014-6010-2
- year: 2014
- mesh: Bacillus subtilis/*metabolism, Chemical Fractionation, Fermentation, Lipopeptides/*metabolism, Peptides, Cyclic/*metabolism, Temperature
- topic2: Biotechnology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 502 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1090) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1090 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 70828 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47324.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |