Strain identifier

BacDive ID: 11557

Type strain: Yes

Species: Paenibacillus brasilensis

Strain Designation: PB172

Strain history: CIP <- 2013, KCTC <- L. Seldin, UFRJ Rio de Janeiro Univ., Rio de Janeiro, Brazil: strain PB172

NCBI tax ID(s): 128574 (species)

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General

@ref: 5458

BacDive-ID: 11557

DSM-Number: 14914

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus brasilensis PB172 is a mesophilic, Gram-positive, motile bacterium that was isolated from maize rhizosphere.

NCBI tax id

  • NCBI tax id: 128574
  • Matching level: species

strain history

@refhistory
5458<- L. Seldin, UFRJ, Brazil; PB172
399752003, L. Seldin, Rio de Janeiro, Brazil: strainPB 172
116990CIP <- 2013, KCTC <- L. Seldin, UFRJ Rio de Janeiro Univ., Rio de Janeiro, Brazil: strain PB172

doi: 10.13145/bacdive11557.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus brasilensis
  • full scientific name: Paenibacillus brasilensis von der Weid et al. 2002

@ref: 5458

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus brasilensis

full scientific name: Paenibacillus brasilensis von der Weid et al. 2002

strain designation: PB172

type strain: yes

Morphology

cell morphology

  • @ref: 116990
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5458CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
36541MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
39975MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116990CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5458positivegrowth30mesophilic
36541positivegrowth30mesophilic
39975positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5458maize rhizosphereSete Lagoas, Minas GeraisBrazilBRAMiddle and South America
116990Environment, Soil, maize rhizosphereMinas Gerais State, CerradoBrazilBRAMiddle and South America2002

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_373.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_258;97_282;98_314;99_373&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: AF273740
  • Sequence Identity:
  • Total samples: 9665
  • soil counts: 4375
  • aquatic counts: 744
  • animal counts: 2534
  • plant counts: 2012

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
54581Risk group (German classification)
1169901Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5458
  • description: Paenibacillus sp. 172 16S ribosomal RNA gene, partial sequence
  • accession: AF273740
  • length: 1384
  • database: ena
  • NCBI tax ID: 128574

Genome sequences

  • @ref: 66792
  • description: Paenibacillus brasilensis DSM 14914
  • accession: 2928301709
  • assembly level: draft
  • database: img
  • NCBI tax ID: 128574

External links

@ref: 5458

culture collection no.: DSM 14914, ATCC BAA 413, CIP 110686, KCTC 3812

straininfo link

  • @ref: 80785
  • straininfo: 97897

literature

  • topic: Phylogeny
  • Pubmed-ID: 12508882
  • title: Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil.
  • authors: von der Weid I, Duarte GF, van Elsas JD, Seldin L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-6-2147
  • year: 2002
  • mesh: Bacillus/*classification/genetics/isolation & purification/metabolism, Bacteria, Anaerobic/*classification/genetics/isolation & purification/metabolism, Brazil, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Genes, Bacterial, Molecular Sequence Data, Nitrogen Fixation, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Terminology as Topic, Zea mays/microbiology
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
5458Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14914)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14914
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36541Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30491
39975Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5598
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80785Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID97897.1StrainInfo: A central database for resolving microbial strain identifiers
116990Curators of the CIPCollection of Institut Pasteur (CIP 110686)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110686