Strain identifier

BacDive ID: 11554

Type strain: Yes

Species: Paenibacillus turicensis

Strain history: <- P. P. Bosshard; MOL722 <- F. Pranada

NCBI tax ID(s): 160487 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7 (current version):
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7 (current version)

General

@ref: 5315

BacDive-ID: 11554

DSM-Number: 14349

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Paenibacillus turicensis DSM 14349 is a mesophilic bacterium that was isolated from swab of cerebrospinal fluid.

NCBI tax id

  • NCBI tax id: 160487
  • Matching level: species

strain history: <- P. P. Bosshard; MOL722 <- F. Pranada

doi: 10.13145/bacdive11554.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus turicensis
  • full scientific name: Paenibacillus turicensis Bosshard et al. 2002

@ref: 5315

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus turicensis

full scientific name: Paenibacillus turicensis Bosshard et al. 2002

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5315CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://bacmedia.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
36643MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5315positivegrowth37mesophilic
36643positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5315
  • sample type: swab of cerebrospinal fluid
  • geographic location: Zurich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Swab
#Host Body Product#Fluids#Cerebrospinal fluid

Safety information

risk assessment

  • @ref: 5315
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
5315Paenibacillus turicensis clone A1 16S ribosomal RNA gene, complete sequenceAF3786941549ena160487
5315Paenibacillus turicensis clone A2 16S ribosomal RNA gene, complete sequenceAF3786951549ena160487
5315Paenibacillus turicensis clone A3a 16S ribosomal RNA gene, complete sequenceAF3786961549ena160487
5315Paenibacillus turicensis clone A3b 16S ribosomal RNA gene, partial sequenceAF3786971358ena160487
5315Paenibacillus turicensis clone B1 16S ribosomal RNA gene, complete sequenceAF3786981548ena160487
5315Paenibacillus turicensis clone B2 16S ribosomal RNA gene, complete sequenceAF3786991548ena160487
5315Paenibacillus turicensis clone B3 16S ribosomal RNA gene, complete sequenceAF3787001548ena160487

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus turicensis DSM 14349GCA_017873435contigncbi160487
66792Paenibacillus turicensis strain DSM 14349160487.3wgspatric160487
66792Paenibacillus turicensis DSM 143492913360750draftimg160487

External links

@ref: 5315

culture collection no.: DSM 14349, NCCB 100011, MOL 722

straininfo link

@refpassport
20218http://www.straininfo.net/strains/163928
20218http://www.straininfo.net/strains/303357

literature

  • topic: Phylogeny
  • Pubmed-ID: 12508893
  • title: Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes.
  • authors: Bosshard PP, Zbinden R, Altwegg M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-6-2241
  • year: 2002
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, *Genes, Bacterial, Genotype, Gram-Positive Endospore-Forming Rods/*classification/genetics/metabolism, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5315Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14349)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14349
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36643Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5295
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)