Strain identifier
BacDive ID: 11554
Type strain:
Species: Paenibacillus turicensis
Strain history: CIP <- 2003, P. P. Bosshard, Zürich Univ., Zürich, Switzerland: strain MOL722 <- F. Pramada
NCBI tax ID(s): 160487 (species)
General
@ref: 5315
BacDive-ID: 11554
DSM-Number: 14349
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, motile
description: Paenibacillus turicensis DSM 14349 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from swab of cerebrospinal fluid.
NCBI tax id
- NCBI tax id: 160487
- Matching level: species
strain history
@ref | history |
---|---|
5315 | <- P. P. Bosshard; MOL722 <- F. Pranada |
123695 | CIP <- 2003, P. P. Bosshard, Zürich Univ., Zürich, Switzerland: strain MOL722 <- F. Pramada |
doi: 10.13145/bacdive11554.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus turicensis
- full scientific name: Paenibacillus turicensis Bosshard et al. 2002
@ref: 5315
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus turicensis
full scientific name: Paenibacillus turicensis Bosshard et al. 2002
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 96.403 | ||
69480 | 100 | positive | ||
123695 | yes | positive | rod-shaped |
colony morphology
- @ref: 123695
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5315 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
36643 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
123695 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5315 | positive | growth | 37 | mesophilic |
36643 | positive | growth | 30 | mesophilic |
123695 | positive | growth | 30-45 | |
123695 | no | growth | 10 | psychrophilic |
culture pH
- @ref: 123695
- ability: positive
- type: growth
- pH: 6
Physiology and metabolism
oxygen tolerance
- @ref: 123695
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123695 | NaCl | positive | growth | 0-4 % |
123695 | NaCl | no | growth | 6 % |
123695 | NaCl | no | growth | 8 % |
123695 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
123695 | citrate | - | carbon source | 16947 |
123695 | esculin | + | hydrolysis | 4853 |
123695 | hippurate | + | hydrolysis | 606565 |
123695 | nitrate | - | reduction | 17632 |
123695 | nitrite | - | reduction | 16301 |
123695 | nitrate | + | respiration | 17632 |
metabolite production
- @ref: 123695
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123695 | 15688 | acetoin | + | |
123695 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
123695 | oxidase | - | |
123695 | beta-galactosidase | + | 3.2.1.23 |
123695 | alcohol dehydrogenase | - | 1.1.1.1 |
123695 | gelatinase | +/- | |
123695 | amylase | + | |
123695 | DNase | - | |
123695 | caseinase | + | 3.4.21.50 |
123695 | catalase | - | 1.11.1.6 |
123695 | tween esterase | + | |
123695 | gamma-glutamyltransferase | - | 2.3.2.2 |
123695 | lecithinase | - | |
123695 | lipase | - | |
123695 | lysine decarboxylase | - | 4.1.1.18 |
123695 | ornithine decarboxylase | - | 4.1.1.17 |
123695 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123695 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123695 | - | - | - | +/- | - | +/- | - | - | +/- | +/- | +/- | +/- | +/- | - | - | - | - | - | - | - | - | +/- | +/- | +/- | +/- | +/- | +/- | +/- | +/- | - | +/- | - | - | - | - | +/- | +/- | - | +/- | - | - | - | - | - | - | - | - | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123695 | + | - | - | - | + | - | - | + | - | - | - | + | + | - | - | + | + | + | + | + | + | - | - | + | + | - | + | + | - | - | - | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | + | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
5315 | swab of cerebrospinal fluid | Zurich | Switzerland | CHE | Europe |
123695 | Cerebrosphinal fluid shout | Zurich | Switzerland | CHE | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | #Swab |
#Host Body Product | #Fluids | #Cerebrospinal fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_145969.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3994;97_70826;98_95044;99_145969&stattab=map
- Last taxonomy: Paenibacillus turicensis subclade
- 16S sequence: AF378700
- Sequence Identity:
- Total samples: 666
- soil counts: 345
- aquatic counts: 100
- animal counts: 156
- plant counts: 65
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5315 | 1 | Risk group (German classification) |
123695 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
5315 | Paenibacillus turicensis clone A1 16S ribosomal RNA gene, complete sequence | AF378694 | 1549 | ena | 160487 |
5315 | Paenibacillus turicensis clone A2 16S ribosomal RNA gene, complete sequence | AF378695 | 1549 | ena | 160487 |
5315 | Paenibacillus turicensis clone A3a 16S ribosomal RNA gene, complete sequence | AF378696 | 1549 | ena | 160487 |
5315 | Paenibacillus turicensis clone A3b 16S ribosomal RNA gene, partial sequence | AF378697 | 1358 | ena | 160487 |
5315 | Paenibacillus turicensis clone B1 16S ribosomal RNA gene, complete sequence | AF378698 | 1548 | ena | 160487 |
5315 | Paenibacillus turicensis clone B2 16S ribosomal RNA gene, complete sequence | AF378699 | 1548 | ena | 160487 |
5315 | Paenibacillus turicensis clone B3 16S ribosomal RNA gene, complete sequence | AF378700 | 1548 | ena | 160487 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus turicensis DSM 14349 | GCA_017873435 | contig | ncbi | 160487 |
66792 | Paenibacillus turicensis strain DSM 14349 | 160487.3 | wgs | patric | 160487 |
66792 | Paenibacillus turicensis DSM 14349 | 2913360750 | draft | img | 160487 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 88.319 | no |
gram-positive | yes | 90.988 | no |
anaerobic | no | 95.02 | no |
aerobic | yes | 53.137 | no |
halophile | no | 81.863 | no |
spore-forming | yes | 96.41 | no |
thermophile | no | 99.638 | yes |
glucose-util | yes | 86.938 | no |
flagellated | yes | 82.749 | no |
glucose-ferment | no | 73.754 | no |
External links
@ref: 5315
culture collection no.: DSM 14349, NCCB 100011, MOL 722, CIP 107817
straininfo link
- @ref: 80782
- straininfo: 49552
literature
- topic: Phylogeny
- Pubmed-ID: 12508893
- title: Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes.
- authors: Bosshard PP, Zbinden R, Altwegg M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-6-2241
- year: 2002
- mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, *Genes, Bacterial, Genotype, Gram-Positive Endospore-Forming Rods/*classification/genetics/metabolism, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5315 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14349) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14349 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
36643 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5295 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
80782 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49552.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
123695 | Curators of the CIP | Collection of Institut Pasteur (CIP 107817) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107817 |