Strain identifier

BacDive ID: 11545

Type strain: Yes

Species: Paenibacillus chibensis

Strain history: HSCC 442 <-- NRRL B-142 <-- FDA strain PCI 221.

NCBI tax ID(s): 59846 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4462

BacDive-ID: 11545

DSM-Number: 11731

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Paenibacillus chibensis DSM 11731 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 59846
  • Matching level: species

strain history

doi: 10.13145/bacdive11545.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus chibensis
  • full scientific name: Paenibacillus chibensis Shida et al. 1997

@ref: 4462

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus chibensis

full scientific name: Paenibacillus chibensis Shida et al. 1997

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4462NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35797MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
4462positivegrowth30mesophilic
35797positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
4462soilUSAUSANorth America
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 4462
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus chibensis gene for 16S rRNA, partial sequenceAB0731941505ena59846
20218Paenibacillus chibensis gene for 16S rRNA, partial sequence, strain: NBRC 15958AB6810061480ena59846
20218B.amylolyticus 16S ribosomal RNAX606061435ena1451
20218Paenibacillus chibensis DNA for 16S rRNAD853951436ena59846

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus chibensis NBRC 15958GCA_004001045contigncbi59846
66792Paenibacillus chibensis strain NBRC 1595859846.3wgspatric59846
66792Paenibacillus chibensis NBRC 159582925295060draftimg59846
67770Paenibacillus chibensis strain NBRC 15958, whole genome shotgun sequencing projectBIMK00000000ncbi59846

GC content

  • @ref: 67770
  • GC-content: 52.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 4462

culture collection no.: DSM 11731, IFO 15958, JCM 9905, NBRC 15958, NRRL B-142, HSCC 442, PCI 221, ATCC 9966, ATCC BAA 725, CCM 1084, CECT 375, CIP 105254, IAM 1112, IFO 3329, KCTC 3758, LMG 14457, NBRC 3329, NCIMB 8144

straininfo link

@refpassport
20218http://www.straininfo.net/strains/162816
20218http://www.straininfo.net/strains/41335
20218http://www.straininfo.net/strains/41337
20218http://www.straininfo.net/strains/335978
20218http://www.straininfo.net/strains/41342

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21887645Paenibacillus telluris sp. nov., a novel phosphate-solubilizing bacterium isolated from soil.Lee JC, Kim CJ, Yoon KHJ Microbiol10.1007/s12275-011-0471-02011Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial, Fatty Acids/chemistry, Molecular Sequence Data, Paenibacillus/*classification/genetics/*isolation & purification/ultrastructure, Phenotype, Phosphates/*chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, SolubilityGenetics
Phylogeny24556633Paenibacillus shirakamiensis sp. nov., isolated from the trunk surface of a Japanese oak (Quercus crispula).Tonouchi A, Tazawa D, Fujita TInt J Syst Evol Microbiol10.1099/ijs.0.055772-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Plant Stems/microbiology, Quercus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26373452Paenibacillus zeae sp. nov., isolated from maize (Zea mays L.) seeds.Liu Y, Zhai L, Wang R, Zhao R, Zhang X, Chen C, Cao Y, Cao Y, Xu T, Ge Y, Zhao J, Cheng CInt J Syst Evol Microbiol10.1099/ijsem.0.0006082015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seeds/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Zea mays/*microbiologyEnzymology
Phylogeny27498790Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.Liu B, Liu GH, Sengonca C, Schumann P, Lan JL, Chen DJ, Cui WD, Lin NQInt J Syst Evol Microbiol10.1099/ijsem.0.0013782016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Solanum tuberosum/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny33595431Description of Paenibacillus dokdonensis sp. nov., a new bacterium isolated from soil.Paek J, Bai L, Shin Y, Kim H, Kook JK, Chang YHInt J Syst Evol Microbiol10.1099/ijsem.0.0047072021
Metabolism34822536Antifungal Activity of Biocontrol Agents In Vitro and Potential Application to Reduce Mycotoxins (Aflatoxin B1 and Ochratoxin A).Illueca F, Vila-Donat P, Calpe J, Luz C, Meca G, Quiles JMToxins (Basel)10.3390/toxins131107522021Aflatoxin B1/*metabolism, Antifungal Agents/*pharmacology, Bacillus amyloliquefaciens/metabolism, Cell-Free System, Fungicides, Industrial/*pharmacology, In Vitro Techniques, Ochratoxins/*metabolism, Paenibacillus/metabolism, Pantoea/metabolism, *Pest Control, Biological, Poisons/*metabolismBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4462Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11731)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11731
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35797Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17253
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/