Strain identifier
BacDive ID: 11535
Type strain:
Species: Paenibacillus sp.
Strain Designation: Mis 2
Strain history: <- T. Uozomi, Dept. Life Sci., Meiji Univ., Kawasaki, Japan; Mis 2
NCBI tax ID(s): 58172 (species)
version 8.1 (current version)
General
@ref: 7385
BacDive-ID: 11535
DSM-Number: 18084
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. Mis 2 is a mesophilic bacterium that was isolated from Rhizosphere soil of Miscanthus sinensis.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 7385
- history: <- T. Uozomi, Dept. Life Sci., Meiji Univ., Kawasaki, Japan; Mis 2
doi: 10.13145/bacdive11535.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 7385
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: Mis 2
type strain: no
Culture and growth conditions
culture medium
- @ref: 7385
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 7385
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7385
- sample type: Rhizosphere soil of Miscanthus sinensis
- host species: Miscanthus sinensis
- geographic location: Zushi City, Kanagawa Prefecture
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_373.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_258;97_282;98_314;99_373&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: AB480885
- Sequence Identity:
- Total samples: 9665
- soil counts: 4375
- aquatic counts: 744
- animal counts: 2534
- plant counts: 2012
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
7385 | Paenibacillus sp. Mis2 gene for 16S ribosomal RNA, partial sequence | AB247329 | 1490 | ena | 367158 |
7385 | Paenibacillus sp. Mis2 gene for 16S rRNA, partial sequence | AB480885 | 1608 | ena | 367158 |
External links
@ref: 7385
culture collection no.: DSM 18084
straininfo link
- @ref: 80766
- straininfo: 405321
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7385 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18084) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18084 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
80766 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405321.1 | StrainInfo: A central database for resolving microbial strain identifiers |