Strain identifier

BacDive ID: 11535

Type strain: No

Species: Paenibacillus sp.

Strain Designation: Mis 2

Strain history: <- T. Uozomi, Dept. Life Sci., Meiji Univ., Kawasaki, Japan; Mis 2

NCBI tax ID(s): 58172 (species)

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General

@ref: 7385

BacDive-ID: 11535

DSM-Number: 18084

keywords: 16S sequence, Bacteria, mesophilic

description: Paenibacillus sp. Mis 2 is a mesophilic bacterium that was isolated from Rhizosphere soil of Miscanthus sinensis.

NCBI tax id

  • NCBI tax id: 58172
  • Matching level: species

strain history

  • @ref: 7385
  • history: <- T. Uozomi, Dept. Life Sci., Meiji Univ., Kawasaki, Japan; Mis 2

doi: 10.13145/bacdive11535.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus sp.
  • full scientific name: Paenibacillus Ash et al. 1994
  • synonyms

    • @ref: 20215
    • synonym: Aerobacillus

@ref: 7385

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus sp.

full scientific name: Paenibacillus sp.

strain designation: Mis 2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 7385
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

  • @ref: 7385
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7385
  • sample type: Rhizosphere soil of Miscanthus sinensis
  • host species: Miscanthus sinensis
  • geographic location: Zushi City, Kanagawa Prefecture
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_373.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_258;97_282;98_314;99_373&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: AB480885
  • Sequence Identity:
  • Total samples: 9665
  • soil counts: 4375
  • aquatic counts: 744
  • animal counts: 2534
  • plant counts: 2012

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
7385Paenibacillus sp. Mis2 gene for 16S ribosomal RNA, partial sequenceAB2473291490ena367158
7385Paenibacillus sp. Mis2 gene for 16S rRNA, partial sequenceAB4808851608ena367158

External links

@ref: 7385

culture collection no.: DSM 18084

straininfo link

  • @ref: 80766
  • straininfo: 405321

Reference

@idauthorscataloguedoi/urltitle
7385Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18084)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18084
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80766Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405321.1StrainInfo: A central database for resolving microbial strain identifiers