Strain identifier

BacDive ID: 11505

Type strain: Yes

Species: Paenibacillus mucilaginosus

Strain Designation: 1480D

Strain history: CIP <- 1998, VKPM <- E.S. Shelobolina: strain B-1480 D

NCBI tax ID(s): 61624 (species)

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General

@ref: 17682

BacDive-ID: 11505

DSM-Number: 24461

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic

description: Paenibacillus mucilaginosus 1480D is an aerobe, spore-forming, mesophilic bacterium that was isolated from rock.

NCBI tax id

  • NCBI tax id: 61624
  • Matching level: species

strain history

@refhistory
17682<- CIP; CIP 105815 <- E. S. Shelobolina, VKPM; VKM B-1480D
67771<- VKPM <- Shebolina E.S.
121157CIP <- 1998, VKPM <- E.S. Shelobolina: strain B-1480 D

doi: 10.13145/bacdive11505.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus mucilaginosus
  • full scientific name: Paenibacillus mucilaginosus (Avakyan et al. 1998) Hu et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Bacillus mucilaginosus

@ref: 17682

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus mucilaginosus

full scientific name: Paenibacillus mucilaginosus (Avakyan et al. 1998) Hu et al. 2010

strain designation: 1480D

type strain: yes

Morphology

cell morphology

@refmotilitygram staincell shape
67771no
67771negative
121157norod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17682BACILLUS MUCILAGINOSUS (DSMZ Medium 1307)yeshttps://mediadive.dsmz.de/medium/1307Name: BACILLUS MUCILAGINOSUS MEDIUM (DSMZ Medium 1307) Composition: Agar 15.0 g/l Sucrose 10.0 g/l CaCO3 5.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water
40263MEDIUM 310 - for Bacillus mucilaginosusyesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.200 g);Agar (15.000 g);Calcium carbonate (5.000 g);Sucrose (10.000 g);Di Potassium monohydrogenophosphate (1.000 g)
121157CIP Medium 310yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=310

culture temp

@refgrowthtypetemperaturerange
17682positivegrowth37mesophilic
40263positivegrowth37mesophilic
67771positivegrowth30mesophilic
121157positivegrowth10-45
121157nogrowth55thermophilic

culture pH

  • @ref: 121157
  • ability: no
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 121157
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
121157NaClpositivegrowth0 %
121157NaClnogrowth2 %
121157NaClnogrowth4 %
121157NaClnogrowth6 %
121157NaClnogrowth8 %
121157NaClnogrowth10 %

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1211574853esculin-hydrolysis
121157606565hippurate-hydrolysis
12115717632nitrate+reduction
12115716301nitrite-reduction
12115717632nitrate-respiration

metabolite production

  • @ref: 121157
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12115715688acetoin-
12115717234glucose-

enzymes

@refvalueactivityec
121157oxidase-
121157beta-galactosidase+3.2.1.23
121157alcohol dehydrogenase-1.1.1.1
121157gelatinase-
121157catalase+1.11.1.6
121157gamma-glutamyltransferase-2.3.2.2
121157lysine decarboxylase-4.1.1.18
121157ornithine decarboxylase-4.1.1.17
121157tryptophan deaminase-
121157urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121157---+------++---+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
17682rockRussiaRUS
67771From clay, rockRussiaRUS
121157RockRussian FederationRUSEurope1984

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_2453.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_1326;97_1574;98_1913;99_2453&stattab=map
  • Last taxonomy: Paenibacillus mucilaginosus subclade
  • 16S sequence: FJ039528
  • Sequence Identity:
  • Total samples: 9397
  • soil counts: 5985
  • aquatic counts: 638
  • animal counts: 878
  • plant counts: 1896

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
176821Risk group (German classification)
1211571Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bacillus mucilaginosus 16S rRNA, partial sequenceAB0450911484ena61624
20218Bacillus mucilaginosus strain VKPM B-7519 16S ribosomal RNA gene, partial sequenceFJ0395281498ena61624

GC content

  • @ref: 67771
  • GC-content: 55.7

External links

@ref: 17682

culture collection no.: DSM 24461, CIP 105815, HSCC 1605, KCTC 3870, VKM B-1480D, VKPM B-7519

straininfo link

  • @ref: 80737
  • straininfo: 13131

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19643872Transfer of Bacillus mucilaginosus and Bacillus edaphicus to the genus Paenibacillus as Paenibacillus mucilaginosus comb. nov. and Paenibacillus edaphicus comb. nov.Hu XF, Li SX, Wu JG, Wang JF, Fang QL, Chen JSInt J Syst Evol Microbiol10.1099/ijs.0.008532-02009Bacillus/*classification/genetics/*isolation & purification/metabolism, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, DNA Gyrase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Enzymology24475050Characterization of a ginsenoside-transforming beta-glucosidase from Paenibacillus mucilaginosus and its application for enhanced production of minor ginsenoside F(2).Cui CH, Kim JK, Kim SC, Im WTPLoS One10.1371/journal.pone.00857272014Biotechnology/methods, Chromatography, High Pressure Liquid, Chromatography, Thin Layer, Cloning, Molecular, DNA Primers/genetics, Ginsenosides/biosynthesis/*metabolism, Hydrogen-Ion Concentration, Kinetics, Paenibacillus/*enzymology, Temperature, beta-Glucosidase/*genetics/metabolismBiotechnology
Metabolism25224518Feasibility of EPS-producing bacterial inoculation to speed up the sand aggregation in the Gurbantunggut Desert, Northwestern China.Wu N, Pan HX, Qiu D, Zhang YMJ Basic Microbiol10.1002/jobm.2014003552014Agricultural Inoculants/*metabolism, Biopolymers/*metabolism, Carbon Dioxide/metabolism, China, Desert Climate, Feasibility Studies, Nitrogen/metabolism, Paenibacillus/classification/*isolation & purification/metabolism, Phosphorus/metabolism, Phylogeny, RNA, Ribosomal, 16S/metabolism, Soil/*chemistry, *Soil MicrobiologyPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17682Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24461)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24461
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40263Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17876
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80737Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13131.1StrainInfo: A central database for resolving microbial strain identifiers
121157Curators of the CIPCollection of Institut Pasteur (CIP 105815)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105815