Strain identifier
BacDive ID: 1149
Type strain:
Species: Heyndrickxia sporothermodurans
Strain Designation: M 215, MB581, MB 581
Strain history: CIP <- 1996, F.G. Priest, Heriot Watt Univ., Edinburgh, Scotland, UK: strain M 215 <- F. Lembke
NCBI tax ID(s): 46224 (species)
General
@ref: 3982
BacDive-ID: 1149
DSM-Number: 10599
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Heyndrickxia sporothermodurans M 215 is an aerobe, spore-forming, mesophilic bacterium that was isolated from UHT-milk.
NCBI tax id
- NCBI tax id: 46224
- Matching level: species
strain history
@ref | history |
---|---|
3982 | <- Lembke, Tetrapak GmbH |
123274 | CIP <- 1996, F.G. Priest, Heriot Watt Univ., Edinburgh, Scotland, UK: strain M 215 <- F. Lembke |
doi: 10.13145/bacdive1149.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Heyndrickxia
- species: Heyndrickxia sporothermodurans
- full scientific name: Heyndrickxia sporothermodurans (Pettersson et al. 1996) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus sporothermodurans
@ref: 3982
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Heyndrickxia
species: Heyndrickxia sporothermodurans
full scientific name: Heyndrickxia sporothermodurans (Pettersson et al. 1996) Gupta et al. 2020
strain designation: M 215, MB581, MB 581
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
29921 | positive | rod-shaped | yes | |
69480 | yes | 96.598 | ||
69480 | positive | 100 | ||
123274 | positive | rod-shaped | no |
pigmentation
- @ref: 29921
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3982 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
38662 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
123274 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3982 | positive | growth | 30 | mesophilic |
29921 | positive | growth | 20-55 | |
29921 | positive | optimum | 37 | mesophilic |
38662 | positive | growth | 30 | mesophilic |
123274 | positive | growth | 22-45 | |
123274 | no | growth | 10 | psychrophilic |
123274 | no | growth | 55 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29921 | positive | growth | 05-09 | alkaliphile |
123274 | positive | growth | 6 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29921 | aerobe |
123274 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
29921 | yes | |
69481 | yes | 100 |
69480 | yes | 100 |
123274 | yes |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29921 | NaCl | positive | growth | <5 % |
123274 | NaCl | positive | growth | 0-4 % |
123274 | NaCl | no | growth | 6 % |
123274 | NaCl | no | growth | 8 % |
123274 | NaCl | no | growth | 10 % |
observation
- @ref: 29921
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29921 | 17057 | cellobiose | + | carbon source |
29921 | 28757 | fructose | + | carbon source |
29921 | 17234 | glucose | + | carbon source |
29921 | 17754 | glycerol | + | carbon source |
29921 | 17306 | maltose | + | carbon source |
29921 | 29864 | mannitol | + | carbon source |
29921 | 37684 | mannose | + | carbon source |
29921 | 37657 | methyl D-glucoside | + | carbon source |
29921 | 17814 | salicin | + | carbon source |
29921 | 17992 | sucrose | + | carbon source |
29921 | 27082 | trehalose | + | carbon source |
29921 | 17151 | xylitol | + | carbon source |
29921 | 4853 | esculin | + | hydrolysis |
29921 | 17632 | nitrate | + | reduction |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | + | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 16899 | D-mannitol | + | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
123274 | 4853 | esculin | + | hydrolysis |
123274 | 606565 | hippurate | + | hydrolysis |
123274 | 17632 | nitrate | - | reduction |
123274 | 16301 | nitrite | - | reduction |
123274 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 123274
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123274 | 15688 | acetoin | - | |
123274 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29921 | catalase | + | 1.11.1.6 |
29921 | gelatinase | + | |
29921 | cytochrome oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
123274 | oxidase | + | |
123274 | beta-galactosidase | - | 3.2.1.23 |
123274 | alcohol dehydrogenase | - | 1.1.1.1 |
123274 | gelatinase | - | |
123274 | amylase | - | |
123274 | DNase | + | |
123274 | caseinase | - | 3.4.21.50 |
123274 | catalase | + | 1.11.1.6 |
123274 | tween esterase | - | |
123274 | gamma-glutamyltransferase | - | 2.3.2.2 |
123274 | lecithinase | - | |
123274 | lipase | - | |
123274 | lysine decarboxylase | - | 4.1.1.18 |
123274 | ornithine decarboxylase | - | 4.1.1.17 |
123274 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
123274 | protease | - | |
123274 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123274 | - | + | + | + | - | - | - | - | - | - | + | + | - | - | - | + | - | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123274 | +/- | - | - | - | +/- | - | - | - | - | - | + | + | - | - | - | - | - | + | +/- | - | - | - | - | + | + | + | + | + | - | - | + | + | - | - | - | +/- | - | - | - | + | - | + | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
3982 | UHT-milk | Italy | ITA | Europe | |
123274 | Food, Milk | Italy | ITA | Europe | 1993 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Dairy product |
#Host Body Product | #Fluids | #Milk |
taxonmaps
- @ref: 69479
- File name: preview.99_38671.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1672;97_2002;98_28353;99_38671&stattab=map
- Last taxonomy: Bacillus sporothermodurans
- 16S sequence: U49078
- Sequence Identity:
- Total samples: 721
- soil counts: 172
- aquatic counts: 163
- animal counts: 322
- plant counts: 64
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3982 | 1 | Risk group (German classification) |
123274 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Bacillus sporothermodurans strain DSM10599(T) rrnA operon 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF071850 | 222 | ena | 46224 |
20218 | Bacillus sporothermodurans strain DSM10599(T) rrnB operon 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF071852 | 386 | ena | 46224 |
3982 | Bacillus sporothermodurans 16S rRNA type I gene, partial sequence | U49078 | 1497 | ena | 46224 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Heyndrickxia sporothermodurans DSM 10599 | GCA_016785185 | contig | ncbi | 46224 |
66792 | Heyndrickxia sporothermodurans DSM 10599 | GCA_003055085 | scaffold | ncbi | 46224 |
66792 | Heyndrickxia sporothermodurans DSM 10599 | GCA_016756695 | chromosome | ncbi | 46224 |
66792 | Bacillus sporothermodurans strain DSM 10599 | 46224.153 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain DSM 10599 | 46224.121 | complete | patric | 46224 |
66792 | Bacillus sporothermodurans strain DSM 10599 | 46224.16 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_140 | 46224.137 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_141 | 46224.138 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_142 | 46224.142 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_143 | 46224.136 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_144 | 46224.135 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_145 | 46224.132 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_146 | 46224.133 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_149 | 46224.150 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_150 | 46224.130 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_151 | 46224.134 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_152 | 46224.149 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_153 | 46224.151 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_154 | 46224.131 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_155 | 46224.128 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_156 | 46224.152 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_157 | 46224.129 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_158 | 46224.127 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_159 | 46224.126 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_160 | 46224.125 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain L1_161 | 46224.122 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M3420-12 | 46224.145 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5055-A | 46224.146 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5233-6 | 46224.144 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5311-1 | 46224.147 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5311-2 | 46224.148 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5352-102 | 46224.124 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5523-4 | 46224.143 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5530-17 | 46224.141 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5547-20 | 46224.139 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5547-25 | 46224.140 | wgs | patric | 46224 |
66792 | Bacillus sporothermodurans strain M5572-6 | 46224.123 | wgs | patric | 46224 |
GC content
@ref | GC-content | method |
---|---|---|
3982 | 36.7 | high performance liquid chromatography (HPLC) |
29921 | 36.7 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 87.832 | yes |
anaerobic | no | 98.937 | yes |
halophile | yes | 64.78 | no |
spore-forming | yes | 94.925 | no |
glucose-util | yes | 85.543 | yes |
aerobic | yes | 93.544 | yes |
flagellated | yes | 63.177 | no |
thermophile | no | 93.848 | no |
motile | yes | 85.408 | no |
glucose-ferment | no | 87.143 | no |
External links
@ref: 3982
culture collection no.: DSM 10599, LMG 17668, CIP 104910, LMG 17894
straininfo link
- @ref: 70820
- straininfo: 10235
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11837291 | Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.). | Reva ON, Smirnov VV, Pettersson B, Priest FG | Int J Syst Evol Microbiol | 10.1099/00207713-52-1-101 | 2002 | Bacillus/*classification/*genetics/isolation & purification/physiology, DNA, Bacterial/analysis/genetics, DNA, Ribosomal Spacer/analysis/genetics, Genes, rRNA/genetics, Gossypium/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Random Amplified Polymorphic DNA Technique, Ribotyping, Sequence Analysis, DNA | Genetics |
Phylogeny | 16166720 | Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin. | Albert RA, Archambault J, Rossello-Mora R, Tindall BJ, Matheny M | Int J Syst Evol Microbiol | 10.1099/ijs.0.02337-0 | 2005 | Bacillus/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology, Sphagnopsida/*metabolism, *Water Microbiology | Genetics |
Stress | 20417981 | The effects of wet heat treatment on the structural and chemical components of Bacillus sporothermodurans spores. | Tabit FT, Buys E | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2010.03.033 | 2010 | Bacillus/*chemistry/growth & development, Bacterial Proteins/analysis, Hot Temperature, *Microbial Viability, Picolinic Acids/analysis, Spores, Bacterial/*chemistry/growth & development, Sterilization/*methods | |
Phylogeny | 27055557 | Bacillus vini sp. nov. isolated from alcohol fermentation pit mud. | Ma K, Chen X, Guo X, Wang Y, Wang H, Zhou S, Song J, Kong D, Zhu J, Dong W, He M, Hu G, Zhao B, Ruan Z | Arch Microbiol | 10.1007/s00203-016-1218-4 | 2016 | Alcohols/*metabolism, *Bacillus/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/metabolism, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Fermentation, Glycolipids/analysis, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylethanolamines/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology | Metabolism |
Phylogeny | 27497907 | Development of a real-time PCR assay for direct detection and quantification of Bacillus sporothermodurans in ultra-high temperature milk. | Abouelnaga M, Lamas A, Miranda JM, Osman M, Cepeda A, Franco CM | J Dairy Sci | 10.3168/jds.2016-10852 | 2016 | Animals, Bacillus/*classification, Milk/*microbiology, RNA, Ribosomal, 16S/genetics, Real-Time Polymerase Chain Reaction, Temperature | |
27692715 | Evaluation of modified stainless steel surfaces targeted to reduce biofilm formation by common milk sporeformers. | Jindal S, Anand S, Huang K, Goddard J, Metzger L, Amamcharla J | J Dairy Sci | 10.3168/jds.2016-11395 | 2016 | Animals, Bacterial Adhesion, *Biofilms, Milk, Polytetrafluoroethylene, *Stainless Steel | ||
Genetics | 31147427 | Genome Sequences of Bacillus sporothermodurans Strains Isolated from Ultra-High-Temperature Milk. | Owusu-Darko R, Allam M, de Oliveira SD, Ferreira CAS, Grover S, Mtshali S, Ismail A, Mallappa RH, Tabit F, Buys EM | Microbiol Resour Announc | 10.1128/MRA.00145-19 | 2019 | Phylogeny | |
Genetics | 33530338 | Taxonomic Evaluation of the Heyndrickxia (Basonym Bacillus) sporothermodurans Group (H. sporothermodurans, H. vini, H. oleronia) Based on Whole Genome Sequences. | Fiedler G, Herbstmann AD, Doll E, Wenning M, Brinks E, Kabisch J, Breitenwieser F, Lappann M, Bohnlein C, Franz CMAP | Microorganisms | 10.3390/microorganisms9020246 | 2021 | ||
36337108 | Recovery potential of cavitation-induced injured cells of common spore-forming bacteria in skim milk exposed to ultrasonication. | Almalki TA, Anand S | JDS Commun | 10.3168/jdsc.2021-0109 | 2021 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
3982 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10599) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10599 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
29921 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 26292 | ||
38662 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16871 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | ||
68371 | Automatically annotated from API 50CH acid | ||||||
68382 | Automatically annotated from API zym | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
70820 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID10235.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
123274 | Curators of the CIP | Collection of Institut Pasteur (CIP 104910) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104910 |