Strain identifier

BacDive ID: 11487

Type strain: Yes

Species: Paenibacillus polymyxa

Strain history: CIP <- 1966, ATCC, Bacillus polymyxa <- A.J. Kluyver

NCBI tax ID(s): 1036171 (strain), 1406 (species)

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General

@ref: 2036

BacDive-ID: 11487

DSM-Number: 36

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus polymyxa DSM 36 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from Unknown source.

NCBI tax id

NCBI tax idMatching level
1036171strain
1406species

strain history

@refhistory
2036<- ATCC <- A.J. Kluyver
67770CCM 1459 <-- BUCSAV 162 <-- NCIB 8158 <-- ATCC 842 <-- A. J. Kluyver.
121931CIP <- 1966, ATCC, Bacillus polymyxa <- A.J. Kluyver

doi: 10.13145/bacdive11487.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus polymyxa
  • full scientific name: Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

  • synonyms

    @refsynonym
    20215Aerobacillus polymyxa
    20215Clostridium polymyxa
    20215Bacillus polymyxa
    20215Paenibacillus jamilae

@ref: 2036

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus polymyxa

full scientific name: Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994

type strain: yes

Morphology

cell morphology

  • @ref: 121931
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 121931

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2036NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37333MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121931CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2036positivegrowth30mesophilic
37333positivegrowth30mesophilic
67770positivegrowth30mesophilic
121931positivegrowth22-45
121931nogrowth10psychrophilic
121931nogrowth55thermophilic

culture pH

  • @ref: 121931
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 121931
  • oxygen tolerance: facultative anaerobe

compound production

  • @ref: 2036
  • compound: inhibitors for glycoside hydrolases

halophily

@refsaltgrowthtested relationconcentration
121931NaClpositivegrowth0-2 %
121931NaClnogrowth4 %
121931NaClnogrowth6 %
121931NaClnogrowth8 %
121931NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside+builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
121931citrate-carbon source16947
121931esculin+hydrolysis4853
121931hippurate-hydrolysis606565
121931nitrate+reduction17632
121931nitrite-reduction16301
121931nitrate+respiration17632
68379nitrate+reduction17632
68379esculin+hydrolysis4853
68379urea-hydrolysis16199
68379gelatin+hydrolysis5291
68379D-ribose+fermentation16988
68379D-xylose+fermentation65327
68379D-mannitol+fermentation16899
68379maltose+fermentation17306
68379lactose+fermentation17716
68379sucrose+fermentation17992
68379glycogen+fermentation28087

metabolite production

  • @ref: 121931
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12193115688acetoin+
12193117234glucose-

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
121931oxidase-
121931beta-galactosidase+3.2.1.23
121931alcohol dehydrogenase-1.1.1.1
121931gelatinase-
121931amylase+
121931DNase-
121931caseinase+3.4.21.50
121931catalase+1.11.1.6
121931tween esterase-
121931gamma-glutamyltransferase-2.3.2.2
121931lecithinase+
121931lipase+
121931lysine decarboxylase-4.1.1.18
121931ornithine decarboxylase-4.1.1.17
121931urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
44995+----++-+-+-++++++++

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121931--++-----+++++-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121931+--+++--+++++-+/---+--++/-+++++++++++/-+/-+++-++------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121931+++++-++-++++++-++++++---+-----+-+++-----+-------+------+---+-------------------------+------------

Isolation, sampling and environmental information

isolation

  • @ref: 121931
  • sample type: Unknown source

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
20361Risk group (German classification)
1219311Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus polymyxa partial 16S rRNA gene, strain DSM 36TAJ3204931521ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 1HG3240641634ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 2HG3240651636ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 3HG3240661637ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 4HG3240671635ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 5HG3240681632ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 6HG3240691641ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 7HG3240701636ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 8HG3240711636ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 9HG3240721641ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 10HG3240731671ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 11HG3240741663ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 12HG3240751667ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 13HG3240761670ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, type strain DSM 36T, clone 14HG3240771604ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60654347ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60655347ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60656347ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60657347ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60658347ena1406
20218Paenibacillus polymyxa 16S ribosomal RNA gene, partial sequenceU60659347ena1406
20218B.polymyxa 16SrRNAX573081547ena1406
20218Paenibacillus polymyxa gene for 16S rRNA, partial sequenceAB006947279ena1406
20218Paenibacillus polymyxa gene for 16S ribosomal RNA, partial sequenceAB0420631504ena1406
20218Paenibacillus polymyxa gene for 16S rRNA, partial sequence, strain: IAM 13419D162761491ena1406
20218Paenibacillus polymyxa strain KCTC3627 16S ribosomal RNA gene, partial sequenceAY3596361438ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 1HE9817661476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 2HE9817671476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 3HE9817681476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 4HE9817691476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 5HE9817701476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 6HE9817711476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 7HE9817721476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 8HE9817731476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 9HE9817741476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 10HE9817751476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 11HE9817761476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 12HE9817771476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 13HE9817781476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 14HE9817791476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 15HE9817801476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 16HE9817811476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 17HE9817821476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 18HE9817831476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 19HE9817841476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 20HE9817851476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 21HE9817861476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 22HE9817871476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 23HE9817881476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 24HE9817891476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 25HE9817901476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 26HE9817911476ena1406
20218Paenibacillus polymyxa partial 16S rRNA gene, strain KCTC 3627, clone 27HE9817921476ena1406
20218Paenibacillus polymyxa gene for 16S rRNA, partial sequenceAB2717581479ena1406
20218B.polymyxa 16S ribosomal RNAX606321434ena1406

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus polymyxa ATCC 8421036171.3wgspatric1036171
66792Paenibacillus polymyxa ATCC 8421036171.11wgspatric1036171
66792Paenibacillus polymyxa strain NCTC103431406.162wgspatric1406
66792Paenibacillus polymyxa N.R. Smith 1105, ATCC 8422547132099draftimg1036171
66792Paenibacillus polymyxa NCTC 103432907128583draftimg1406
67770Paenibacillus polymyxa ATCC 842GCA_000217775scaffoldncbi1036171
67770Paenibacillus polymyxa NCTC10343GCA_900454525contigncbi1406
66792Paenibacillus polymyxa ATCC 842GCA_022811565completencbi1036171
66792Paenibacillus polymyxa ATCC 842 2GCA_903797665scaffoldncbi1036171

GC content

@refGC-contentmethod
203645.6Buoyant density centrifugation (BD)
203644.3thermal denaturation, midpoint method (Tm)
6777046.6Buoyant density centrifugation (BD)
6777044

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes70.918no
gram-positiveyes87.155no
anaerobicno97.307no
aerobicyes84.233no
halophileno92.166no
spore-formingyes97.219no
motileyes87.627no
glucose-fermentno68.457no
thermophileno99.71yes
glucose-utilyes91.105no

External links

@ref: 2036

culture collection no.: DSM 36, ATCC 842, BUCSAV 162, CCM 1459, JCM 2507, LMG 13294, NCIB 8158, NCTC 10343, CCUG 7426, BCRC 11168, CECT 155, CFBP 4258, CIP 66.22, HAMBI 1897, HAMBI 635, IAM 13419, IFO 15309, KCTC 3627, KCTC 3858, LMG 6319, NBRC 15309, NCFB 1774, NCIMB 8158, NRRL B-4317, VKM B-514, VTT E-97008, NCDO 1774

straininfo link

  • @ref: 80721
  • straininfo: 92295

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology9919651Expression and secretion of Bacillus polymyxa neopullulanase in Saccharomyces cerevisiae.Yebra MJ, Blasco A, Sanz PFEMS Microbiol Lett10.1111/j.1574-6968.1999.tb13353.x1999Actins/genetics, Amino Acid Sequence, Bacillus/*enzymology/genetics, Base Sequence, Blotting, Northern, Blotting, Southern, DNA, Bacterial/analysis, Glycoside Hydrolases/chemistry/*genetics/metabolism, Molecular Sequence Data, Promoter Regions, Genetic, Recombinant Proteins/metabolism, Saccharomyces cerevisiae/enzymology/*genetics, Sequence Analysis, DNA, Substrate SpecificityMetabolism
Biotechnology16347159Production of l-Phenylalanine from Starch by Analog-Resistant Mutants of Bacillus polymyxa.Shetty K, Crawford DL, Pometto ALAppl Environ Microbiol10.1128/aem.52.4.637-643.19861986
Phylogeny18604494Auxin production and detection of the gene coding for the Auxin Efflux Carrier (AEC) protein in Paenibacillus polymyxa.Da Mota FF, Gomes EA, Seldin LJ Microbiol10.1007/s12275-007-0245-x2008Bacillus/classification/*genetics/isolation & purification/*metabolism, Bacterial Proteins/*genetics/metabolism, Genome, Bacterial, Indoleacetic Acids/*metabolism, Phylogeny, Plant Growth Regulators/*metabolism, Plant Roots/microbiology, *Soil Microbiology, Sorghum/microbiology, Zea mays/microbiologyMetabolism
Phylogeny19935889Identification and application of AFLP-derived genetic markers for quantitative PCR-based tracking of Bacillus and Paenibacillus spp. released in soil.Providenti MA, Begin M, Hynes S, Lamarche C, Chitty D, Hahn J, Beaudette LA, Scroggins R, Smith MLCan J Microbiol10.1139/w09-0712009Amplified Fragment Length Polymorphism Analysis, Bacillus/classification/*genetics/isolation & purification, Base Sequence, Colony Count, Microbial, DNA Primers/genetics, DNA, Bacterial/genetics/isolation & purification, Ecosystem, Genetic Markers, Molecular Sequence Data, Paenibacillus/classification/*genetics/isolation & purification, *Soil Microbiology, Species SpecificityEnzymology
Genetics21742878Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium.Jeong H, Park SY, Chung WH, Kim SH, Kim N, Park SH, Kim JFJ Bacteriol10.1128/JB.05447-112011Anti-Bacterial Agents/biosynthesis, Biosynthetic Pathways/genetics, DNA, Bacterial/*chemistry/*genetics, Enzymes/genetics, *Genome, Bacterial, Molecular Sequence Data, Paenibacillus/cytology/*genetics/isolation & purification, Plant Development, *Sequence Analysis, DNA, Soil Microbiology, Spores, Bacterial/cytologyEnzymology
Enzymology23181593Antibacterial, antifungal and antioxidant activities of the ethanol extract of the stem bark of Clausena heptaphylla.Fakruddin M, Mannan KS, Mazumdar RM, Afroz HBMC Complement Altern Med10.1186/1472-6882-12-2322012Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Antifungal Agents/chemistry/isolation & purification/*pharmacology, Antioxidants/chemistry/isolation & purification/*pharmacology, Bacteria/drug effects, Clausena/*chemistry, Fungi/drug effects, Microbial Sensitivity Tests, Plant Bark/*chemistry, Plant Extracts/chemistry/isolation & purification/*pharmacologyPhylogeny
Phylogeny23912443Paenibacillus beijingensis sp. nov., a nitrogen-fixing species isolated from wheat rhizosphere soil.Wang LY, Li J, Li QX, Chen SFAntonie Van Leeuwenhoek10.1007/s10482-013-9974-52013Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Nitrogen/metabolism, Nucleic Acid Hybridization, Oxidoreductases, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Triticum/microbiologyMetabolism
Phylogeny24425736Paenibacillus doosanensis sp. nov., isolated from soil.Kim JH, Kang H, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.050716-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26063444Paenibacillus enshidis sp. nov., Isolated from the Nodules of Robinia pseudoacacia L.Yin J, He D, Li X, Zeng X, Tian M, Cheng GCurr Microbiol10.1007/s00284-015-0854-22015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Robinia/*microbiology, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spores, Bacterial/cytology, Vitamin K 2/analysisTranscriptome
Phylogeny26268929Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia.Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DCInt J Syst Evol Microbiol10.1099/ijsem.0.0005212015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Flowers/*microbiology, Magnolia/*microbiology, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny26769366Paenibacillus bovis sp. nov., isolated from raw yak (Bos grunniens) milk.Gao C, Han J, Liu Z, Xu X, Hang F, Wu ZInt J Syst Evol Microbiol10.1099/ijsem.0.0009002016
28117314Benzotriazole-Mediated Synthesis and Antibacterial Activity of Novel N-Acylcephalexins.Agha KA, Abo-Dya NE, Ibrahim TS, Abdel-Aal EH, Hegazy WASci Pharm10.3390/scipharm840304842016
Pathogenicity30678237Enhanced NADH Metabolism Involves Colistin-Induced Killing of Bacillus subtilis and Paenibacillus polymyxa.Yu Z, Zhu Y, Fu J, Qiu J, Yin JMolecules10.3390/molecules240303872019Anti-Bacterial Agents/*pharmacology, Bacillus subtilis/*drug effects/*metabolism, Citric Acid Cycle/drug effects, Colistin/*pharmacology, Electron Transport/drug effects, NAD/*metabolism, Oxidative Stress/drug effects, Paenibacillus polymyxa/*drug effects/*metabolismMetabolism
Metabolism30819804Unraveling the subtleties of beta-(1-->3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families.Kuhaudomlarp S, Pergolizzi G, Patron NJ, Henrissat B, Field RAJ Biol Chem10.1074/jbc.RA119.0077122019Bacterial Proteins/chemistry/genetics/*metabolism, Euglena gracilis/enzymology/genetics, Glycoside Hydrolases/chemistry/genetics/*metabolism, Ochromonas/enzymology/genetics, Oligosaccharides/chemistry/*metabolism, Paenibacillus polymyxa/*enzymology/genetics, beta-Glucans/chemistry/*metabolismEnzymology
Phylogeny31961287Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure.Velazquez LF, Rajbanshi S, Guan S, Hinchee M, Welsh AInt J Syst Evol Microbiol10.1099/ijsem.0.0036722020Animals, Bacterial Typing Techniques, Base Composition, Cattle, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Fermentation, Manure/*microbiology, Nucleic Acid Hybridization, Paenibacillus/*classification/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TexasTranscriptome
Phylogeny32375953Genome-based reclassification of Paenibacillus jamilae Aguilera et al. 2001 as a later heterotypic synonym of Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994.Kwak MJ, Choi SB, Ha SM, Kim EH, Kim BY, Chun JInt J Syst Evol Microbiol10.1099/ijsem.0.0041402020Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Genomics, Nucleic Acid Hybridization, Paenibacillus/*classification, Paenibacillus polymyxa/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Genetics32764104Peptide-based quorum sensing systems in Paenibacillus polymyxa.Voichek M, Maass S, Kroniger T, Becher D, Sorek RLife Sci Alliance10.26508/lsa.2020008472020Bacterial Proteins/genetics, Genome, Bacterial/genetics, Genomics/methods, Paenibacillus/genetics, Paenibacillus polymyxa/*genetics, Plant Development, Quorum Sensing/genetics/*physiology
34413842A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in Paenibacillus polymyxa.Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun DFront Microbiol10.3389/fmicb.2021.7095712021
Metabolism34822536Antifungal Activity of Biocontrol Agents In Vitro and Potential Application to Reduce Mycotoxins (Aflatoxin B1 and Ochratoxin A).Illueca F, Vila-Donat P, Calpe J, Luz C, Meca G, Quiles JMToxins (Basel)10.3390/toxins131107522021Aflatoxin B1/*metabolism, Antifungal Agents/*pharmacology, Bacillus amyloliquefaciens/metabolism, Cell-Free System, Fungicides, Industrial/*pharmacology, In Vitro Techniques, Ochratoxins/*metabolism, Paenibacillus/metabolism, Pantoea/metabolism, *Pest Control, Biological, Poisons/*metabolismBiotechnology
Phylogeny35324421Paenibacillus farraposensis sp. nov., isolated from a root nodule of Arachis villosa.Roldan DM, Costa A, Kralova S, Busse HJ, Amarelle V, Fabiano E, Menes RJInt J Syst Evol Microbiol10.1099/ijsem.0.0052942022Arachis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Paenibacillus, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Metabolism35563415Analysis of Xylose Operon from Paenibacillus polymyxa ATCC842 and Development of Tools for Gene Expression.Wang Z, Fang Y, Shi Y, Xin Y, Gu Z, Yang T, Li Y, Ding Z, Shi G, Zhang LInt J Mol Sci10.3390/ijms230950242022Gene Expression, Operon, *Paenibacillus/genetics/metabolism, *Paenibacillus polymyxa/genetics/metabolism, Xylose/metabolism

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2036Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 36)https://www.dsmz.de/collection/catalogue/details/culture/DSM-36
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37333Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10245
44995Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 7426)https://www.ccug.se/strain?id=7426
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
80721Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92295.1StrainInfo: A central database for resolving microbial strain identifiers
121931Curators of the CIPCollection of Institut Pasteur (CIP 66.22)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2066.22