Strain identifier
BacDive ID: 11464
Type strain: 
Species: Paenibacillus amylolyticus
Strain Designation: NRS-290
Variant: Isotype of BacDive ID 11466
Strain history: <- O. Shida; HSCC 434 <- NRRL <- N. R. Smith; NRS-290
NCBI tax ID(s): 1451 (species)
version 8.1 (current version)
General
@ref: 4461
BacDive-ID: 11464
DSM-Number: 11730
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus amylolyticus NRS-290 is a mesophilic bacterium of the family Paenibacillaceae.
NCBI tax id
- NCBI tax id: 1451
- Matching level: species
strain history
- @ref: 4461
- history: <- O. Shida; HSCC 434 <- NRRL <- N. R. Smith; NRS-290
doi: 10.13145/bacdive11464.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus amylolyticus
- full scientific name: Paenibacillus amylolyticus (Nakamura 1984 ex Choukévitch 1911) Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Bacillus amylolyticus
@ref: 4461
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus amylolyticus
full scientific name: Paenibacillus amylolyticus (Nakamura 1984) Ash et al. 1994 emend. Shida et al. 1997
strain designation: NRS-290
variant: Isotype of BacDive ID 11466
type strain: yes
Culture and growth conditions
culture medium
- @ref: 32930
- name: MEDIUM 3 - Columbia agar
- growth: yes
- composition: Columbia agar (39.000 g);distilled water (1000.000 ml)
culture temp
- @ref: 32930
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Safety information
risk assessment
- @ref: 4461
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Paenibacillus lautus gene for 16S rRNA, partial sequence | AB006945 | 279 | ena | 1401 |
| 20218 | Paenibacillus lautus gene for 16S rRNA, partial sequence, strain: NBRC 15876 | AB680987 | 1481 | ena | 1401 |
| 20218 | Paenibacillus lautus DNA for 16S rRNA, partial sequence | D85609 | 1436 | ena | 1401 |
| 20218 | Paenibacillus amylolyticus partial 16S rRNA gene, isolate OS-92.a | AM237378 | 1465 | ena | 1451 |
External links
@ref: 4461
culture collection no.: DSM 11730, IFO 15957, JCM 9906, NBRC 15957, NRRL B-14940, HSCC 434
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18319478 | Paenibacillus provencensis sp. nov., isolated from human cerebrospinal fluid, and Paenibacillus urinalis sp. nov., isolated from human urine. | Roux V, Fenner L, Raoult D | Int J Syst Evol Microbiol | 10.1099/ijs.0.65228-0 | 2008 | Adult, Bacterial Typing Techniques, Cerebrospinal Fluid/*microbiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Female, Genes, rRNA, Genotype, Gram-Negative Bacteria/*classification/genetics/*isolation & purification, Gram-Negative Bacterial Infections/*microbiology, Humans, Male, Middle Aged, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Urine/*microbiology | Genetics |
| Phylogeny | 19542122 | Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra. | Nelson DM, Glawe AJ, Labeda DP, Cann IK, Mackie RI | Int J Syst Evol Microbiol | 10.1099/ijs.0.004572-0 | 2009 | Alaska, Bacterial Typing Techniques, Base Composition, *Cold Temperature, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Gram-Positive Endospore-Forming Rods/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Xylans/*metabolism | Genetics |
| 24031795 | Cellulolytic potential of a novel strain of Paenibacillus sp. isolated from the armored catfish Parotocinclus maculicauda gut. | de Castro AL, Vollu RE, Peixoto RS, Grigorevski-Lima AL, Coelho RR, Bon EP, Rosado AS, Seldin L | Braz J Microbiol | 10.1590/S1517-838220110004000048 | 2011 | |||
| Phylogeny | 28671536 | Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata. | Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001901 | 2017 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Plant Leaves/*microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29679163 | Paenibacillus panacihumi sp. nov., a potential plant growth-promoting bacterium isolated from ginseng-cultivated soil. | Kim CG, Kang JP, Huo Y, Chokkalingam M, Kim YJ, Kim DH, Yang DC | Arch Microbiol | 10.1007/s00203-018-1517-z | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Paenibacillus/classification/genetics/*isolation & purification/metabolism, Panax/*growth & development/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Metabolism |
| Phylogeny | 30361975 | Paenibacillus seodonensis sp. nov., isolated from a plant of the genus Campanula. | Kang MS, Lee KE, Lee EY, Park SJ | J Microbiol | 10.1007/s12275-018-8455-y | 2018 | Bacterial Typing Techniques, Base Composition, Campanulaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Genotype, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Temperature | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4461 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11730) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11730 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 32930 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14880 |