Strain identifier
BacDive ID: 11455
Type strain: 
Species: Cohnella plantaginis
Strain Designation: YN-83
Strain history: <- L. Wang, China Agric. Univ., College Biol. Sci., Beijing; YN-83
NCBI tax ID(s): 1133857 (species)
version 8.1 (current version)
General
@ref: 18031
BacDive-ID: 11455
DSM-Number: 25424
keywords: 16S sequence, Bacteria, mesophilic
description: Cohnella plantaginis YN-83 is a mesophilic bacterium that was isolated from plantain rhizosphere soil.
NCBI tax id
- NCBI tax id: 1133857
- Matching level: species
strain history
- @ref: 18031
- history: <- L. Wang, China Agric. Univ., College Biol. Sci., Beijing; YN-83
doi: 10.13145/bacdive11455.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Cohnella
- species: Cohnella plantaginis
- full scientific name: Cohnella plantaginis Wang et al. 2012
@ref: 18031
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Cohnella
species: Cohnella plantaginis
full scientific name: Cohnella plantaginis Wang et al. 2012
strain designation: YN-83
type strain: no
Culture and growth conditions
culture medium
- @ref: 18031
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 18031
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 18031
- sample type: plantain rhizosphere soil
- geographic location: Kunming, Yunnan province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_153035.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_3208;97_3938;98_5016;99_153035&stattab=map
- Last taxonomy: Cohnella plantaginis
- 16S sequence: JN982125
- Sequence Identity:
- Total samples: 114
- soil counts: 102
- aquatic counts: 2
- animal counts: 4
- plant counts: 6
Sequence information
16S sequences
- @ref: 18031
- description: Cohnella plantaginis strain YN-83 16S ribosomal RNA gene, partial sequence
- accession: JN982125
- length: 1521
- database: ena
- NCBI tax ID: 1133857
GC content
- @ref: 18031
- GC-content: 59.3
External links
@ref: 18031
culture collection no.: DSM 25424, CGMCC 1.12047
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22543748 | Cohnella plantaginis sp. nov., a novel nitrogen-fixing species isolated from plantain rhizosphere soil. | Wang LY, Chen SF, Wang L, Zhou YG, Liu HC | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9715-1 | 2012 | Aerobiosis, Bacillales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Nitrogen/*metabolism, *Nitrogen Fixation, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Plantago/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 24556632 | Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays. | Kampfer P, Glaeser SP, McInroy JA, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.060814-0 | 2014 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, Zea mays/*microbiology | Genetics |
| Phylogeny | 25367338 | Cohnella capsici sp. nov., a novel nitrogen-fixing species isolated from Capsicum annuum rhizosphere soil, and emended description of Cohnella plantaginis. | Wang LY, Wang TS, Chen SF | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0310-5 | 2014 | Aerobiosis, Bacillales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, *Capsicum, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18031 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25424) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25424 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |