Strain identifier

BacDive ID: 1142

Type strain: Yes

Species: Sutcliffiella horikoshii

Strain Designation: PN 121, JP 277

Strain history: CIP <- 1997, DSMZ <- H. Outtrup, Novo Nordisc A/S: strain PN 121

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General

@ref: 3249

BacDive-ID: 1142

DSM-Number: 8719

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, motile, rod-shaped

description: Sutcliffiella horikoshii PN 121 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Bacillaceae.

NCBI tax id

NCBI tax idMatching level
79883species
1076414strain

strain history

@refhistory
3249<- H. Outtrup, Novo Nordisk A/S; JP 277
119967CIP <- 1997, DSMZ <- H. Outtrup, Novo Nordisc A/S: strain PN 121

doi: 10.13145/bacdive1142.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Sutcliffiella
  • species: Sutcliffiella horikoshii
  • full scientific name: Sutcliffiella horikoshii (Nielsen et al. 1995) Gupta et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacillus horikoshii

@ref: 3249

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Sutcliffiella

species: Sutcliffiella horikoshii

full scientific name: Sutcliffiella horikoshii (Nielsen et al. 1995) Gupta et al. 2020

strain designation: PN 121, JP 277

type strain: yes

Morphology

cell morphology

  • @ref: 119967
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3249ALKALINE NUTRIENT AGAR (DSMZ Medium 31)yeshttps://mediadive.dsmz.de/medium/31Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31; with strain-specific modifications) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaCl 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water
35805MEDIUM 113 - for BacillusyesDistilled water make up to (900.000 ml);Columbia agar (39.000 g);Solution 1 - M00343 (100.000 ml)
119967CIP Medium 113yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=113

culture temp

@refgrowthtypetemperaturerange
3249positivegrowth30mesophilic
35805positivegrowth30mesophilic
119967positivegrowth10-41
119967nogrowth45thermophilic
119967nogrowth55thermophilic

culture pH

  • @ref: 119967
  • ability: no
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 119967
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
119967NaClpositivegrowth0-8 %
119967NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119967esculin+hydrolysis4853
119967hippurate+hydrolysis606565
119967nitrate-reduction17632
119967nitrite-reduction16301
119967nitrate-respiration17632

metabolite production

  • @ref: 119967
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11996715688acetoin-
11996717234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
119967oxidase-
119967beta-galactosidase+3.2.1.23
119967alcohol dehydrogenase-1.1.1.1
119967gelatinase+
119967amylase-
119967DNase-
119967caseinase-3.4.21.50
119967catalase+1.11.1.6
119967tween esterase-
119967gamma-glutamyltransferase-2.3.2.2
119967lysine decarboxylase-4.1.1.18
119967ornithine decarboxylase-4.1.1.17
119967urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119967---+-----+++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119967----+-----+++--------++/-++++/-+---+---++------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119967++-----+-------++----++--------+---+-----+-------+---+-----++--------------------------------------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_977.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_567;97_659;98_762;99_977&stattab=map
  • Last taxonomy: Bacillus horikoshii
  • 16S sequence: X76443
  • Sequence Identity:
  • Total samples: 3305
  • soil counts: 1032
  • aquatic counts: 557
  • animal counts: 523
  • plant counts: 1193

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
32491Risk group (German classification)
1199671Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bacillus horikoshii gene for 16S rRNAAB0438651521ena1076414
20218Bacillus horikoshii DSM 8719, 16S rRNA geneX764431529ena1076414

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sutcliffiella horikoshii DSM 8719GCA_001648575contigncbi1076414
66792Bacillus horikoshii DSM 87191076414.5wgspatric1076414
66792Bacillus horikoshii DSM 87192731957965draftimg1076414

GC content

  • @ref: 3249
  • GC-content: 41.3
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.654no
flagellatedyes86.021no
gram-positiveyes87.803no
anaerobicno98.736no
aerobicyes92.301no
halophileyes64.275no
spore-formingyes95.203no
thermophileno96.28yes
glucose-utilyes87.589no
glucose-fermentno94.017no

External links

@ref: 3249

culture collection no.: DSM 8719, ATCC 700161, CIP 105300

straininfo link

  • @ref: 70813
  • straininfo: 10536

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24614848Bacillus tianshenii sp. nov., isolated from a marine sediment sample.Jiang Z, Zhang DF, Khieu TN, Son CK, Zhang XM, Cheng J, Tian XP, Zhang S, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.062224-02014Bacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Metabolism27084709Bacillus mesophilus sp. nov., an alginate-degrading bacterium isolated from a soil sample collected from an abandoned marine solar saltern.Zhou YX, Liu GH, Liu B, Chen GJ, Du ZJAntonie Van Leeuwenhoek10.1007/s10482-016-0692-72016Alginates/*metabolism, Bacillus/genetics/*isolation & purification/*metabolism, Cell Wall/metabolism, China, Fatty Acids/metabolism, Genotype, Glucuronic Acid/metabolism, Hexuronic Acids/metabolism, Nucleic Acid Hybridization, Peptidoglycan/metabolism, Phenotype, Phosphatidylethanolamines/metabolism, Phylogeny, Sequence Analysis, DNA, Sodium Chloride, Soil/chemistry, *Soil Microbiology, Vitamin K 2/metabolismPhylogeny
Genetics27417833Draft Whole-Genome Sequence of the Type Strain Bacillus horikoshii DSM 8719.Hernandez-Gonzalez IL, Olmedo-Alvarez GGenome Announc10.1128/genomeA.00641-162016
Phylogeny35195511Sutcliffiella deserti sp. nov., isolated from desert soil.Bai P, Zhang S, Chen Y, Ping W, Pang H, Du J, Li Y, Zhang JInt J Syst Evol Microbiol10.1099/ijsem.0.0052592022*Bacillaceae/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Mongolia, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8719)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8719
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35805Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17304
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70813Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID10536.1StrainInfo: A central database for resolving microbial strain identifiers
119967Curators of the CIPCollection of Institut Pasteur (CIP 105300)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105300