Strain identifier
BacDive ID: 11381
Type strain:
Species: Aneurinibacillus migulanus
Strain history: CIP <- 1993, O. Shida, Res. Lab. Higeta Shoyu Co, Japan <- ATCC, Bacillus brevis <- NCTC <- R. Synge
NCBI tax ID(s): 47500 (species)
General
@ref: 1161
BacDive-ID: 11381
DSM-Number: 2895
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile, antibiotic compound production
description: Aneurinibacillus migulanus DSM 2895 is a spore-forming, mesophilic, motile bacterium that produces antibiotic compounds.
NCBI tax id
- NCBI tax id: 47500
- Matching level: species
strain history
@ref | history |
---|---|
1161 | <- Schering AG <- ATCC <- NCTC <- R.L.M. Syndge <- Inst. Trop. Med., Moscow (Bacillus brevis) |
67770 | O. Shida <-- ATCC 9999 <-- NCTC 7096 <-- R. L. M. Synge <-- Inst. Trop. Med., Moscow. |
120951 | CIP <- 1993, O. Shida, Res. Lab. Higeta Shoyu Co, Japan <- ATCC, Bacillus brevis <- NCTC <- R. Synge |
doi: 10.13145/bacdive11381.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Aneurinibacillus
- species: Aneurinibacillus migulanus
- full scientific name: Aneurinibacillus migulanus (Takagi et al. 1993) Shida et al. 1996
synonyms
- @ref: 20215
- synonym: Bacillus migulanus
@ref: 1161
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Aneurinibacillus
species: Aneurinibacillus migulanus
full scientific name: Aneurinibacillus migulanus (Takagi et al. 1993) Shida et al. 1996 emend. Heyndrickx et al. 1997
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 95.076 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1161 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
38152 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
120951 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1161 | positive | growth | 30 | mesophilic |
38152 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
compound production
@ref | compound |
---|---|
1161 | gramicidin |
1161 | protease |
1161 | restriction endonuclease BbvI |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type |
---|---|---|---|---|---|
38152 | Moscow | Russia | RUS | Europe | |
67770 | Garden soil | ||||
120951 | Moscow | Russian Federation | RUS | Europe | Environment, Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_916.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_162;96_542;97_625;98_723;99_916&stattab=map
- Last taxonomy: Aneurinibacillus
- 16S sequence: X94195
- Sequence Identity:
- Total samples: 1947
- soil counts: 881
- aquatic counts: 218
- animal counts: 736
- plant counts: 112
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1161 | 1 | Risk group (German classification) |
120951 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aneurinibacillus migulanus DNA for 16S ribosomal RNA | D78462 | 1422 | ena | 47500 |
20218 | Aneurinibacillus migulanus strain B0270 16S ribosomal RNA gene, partial sequence | KC527683 | 1006 | ena | 47500 |
20218 | Aneurinibacillus migulanus gene for 16S rRNA, partial sequence, strain:DSM 2895T | AB112723 | 1489 | ena | 47500 |
20218 | Aneurinibacillus migulanus isolate Am25 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | EU723617 | 1157 | ena | 47500 |
20218 | B.migulanus 16S ribosomal RNA | X94195 | 1483 | ena | 47500 |
20218 | Aneurinibacillus migulanus gene for 16S rRNA, partial sequence, strain: NBRC 15520 | AB680889 | 1464 | ena | 47500 |
67770 | Aneurinibacillus migulanus gene for 16S rRNA, partial sequence, strain: JCM 8504 | LC379068 | 1461 | ena | 47500 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aneurinibacillus migulanus strain DSM 2895 | 47500.9 | wgs | patric | 47500 |
66792 | Aneurinibacillus migulanus strain DSM 2895 | 47500.13 | wgs | patric | 47500 |
66792 | Aneurinibacillus migulanus strain NBRC 15520 | 47500.16 | wgs | patric | 47500 |
66792 | Aneurinibacillus migulanus strain NCTC 7096 | 47500.8 | wgs | patric | 47500 |
66792 | Aneurinibacillus migulanus DSM 2895 | 2645727852 | draft | img | 47500 |
66792 | Aneurinibacillus migulanus DSM 2895 | 2615840722 | draft | img | 47500 |
66792 | Aneurinibacillus migulanus ATCC 9999 | 2563366674 | draft | img | 47500 |
66792 | Aneurinibacillus migulanus NCTC 7096 | 2627854104 | draft | img | 47500 |
67770 | Aneurinibacillus migulanus NBRC 15520 | GCA_006539965 | contig | ncbi | 47500 |
67770 | Aneurinibacillus migulanus DSM 2895 | GCA_900100065 | scaffold | ncbi | 47500 |
67770 | Aneurinibacillus migulanus NCTC 7096 | GCA_000878905 | scaffold | ncbi | 47500 |
67770 | Aneurinibacillus migulanus DSM 2895 | GCA_001274715 | scaffold | ncbi | 47500 |
GC content
@ref | GC-content | method |
---|---|---|
1161 | 42.5 | |
67770 | 42.5 | high performance liquid chromatography (HPLC) |
67770 | 51.1 | Buoyant density centrifugation (BD) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 78.173 | no |
anaerobic | no | 97.456 | no |
halophile | no | 94.388 | no |
spore-forming | yes | 95.728 | no |
glucose-util | yes | 89.642 | no |
aerobic | yes | 87.722 | no |
flagellated | yes | 69.361 | no |
thermophile | no | 96.042 | no |
motile | yes | 88.68 | no |
glucose-ferment | no | 92.289 | no |
External links
@ref: 1161
culture collection no.: DSM 2895, ATCC 9999, CIP 103841, IFO 15520, IFO 3864, JCM 8504, NBRC 15520, NBRC 3864, NCIB 7096, NCTC 7096, VKM B-1722, BCRC 11717, CGMCC 1.3475, KCTC 3835, LMG 12390, LMG 15427, NCIMB 7096, NRRL NRS-1137
straininfo link
@ref | straininfo |
---|---|
80611 | 7123 |
80612 | 317498 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phenotype | 17720841 | The ability of Aneurinibacillus migulanus (Bacillus brevis) to produce the antibiotic gramicidin S is correlated with phenotype variation. | Berditsch M, Afonin S, Ulrich AS | Appl Environ Microbiol | 10.1128/AEM.00881-07 | 2007 | Anti-Bacterial Agents/*biosynthesis/pharmacology, Bacillus/*classification/drug effects/metabolism/physiology, Biotechnology/methods, Culture Media, Drug Resistance, Bacterial, Gramicidin/*biosynthesis/pharmacology, Phenotype, Spores, Bacterial/physiology | Cultivation |
Genetics | 25838489 | Draft Genome Sequence of Aneurinibacillus migulanus NCTC 7096. | Alenezi FN, Weitz HJ, Belbahri L, Nidhal J, Luptakova L, Jaspars M, Woodward S | Genome Announc | 10.1128/genomeA.00234-15 | 2015 | ||
Enzymology | 26467472 | A Multiple-Labeling Strategy for Nonribosomal Peptide Synthetases Using Active-Site-Directed Proteomic Probes for Adenylation Domains. | Ishikawa F, Suzuki T, Dohmae N, Kakeya H | Chembiochem | 10.1002/cbic.201500481 | 2015 | Azides/chemistry, Bacillales/enzymology, Bacterial Proteins/chemistry/*metabolism, Catalytic Domain, Click Chemistry, Electrophoresis, Polyacrylamide Gel, Molecular Probes/*chemistry, Peptide Synthases/*metabolism, Protein Structure, Tertiary, Proteome/analysis | Metabolism |
Genetics | 26494674 | High-Quality Draft Genome Sequence of Aneurinibacillus migulanus ATCC 9999T (DSM 2895), a Gramicidin S-Producing Bacterium Isolated from Garden Soil. | Wang JP, Liu B, Liu GH, Ge CB, Xiao RF, Zheng XF, Shi H | Genome Announc | 10.1128/genomeA.01227-15 | 2015 | Phylogeny | |
Phylogeny | 26542530 | Aneurinibacillus humi sp. nov., Isolated from Soil Collected in Ukraine. | Lee K, Lee SS | Curr Microbiol | 10.1007/s00284-015-0930-7 | 2015 | Aerobiosis, Bacillales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/growth & development, Temperature, Ukraine, Vitamin K 2/analysis | Genetics |
Metabolism | 26686620 | Strain-level diversity of secondary metabolism in the biocontrol species Aneurinibacillus migulanus. | Alenezi FN, Rekik I, Belka M, Ibrahim AF, Luptakova L, Jaspars M, Woodward S, Belbahri L | Microbiol Res | 10.1016/j.micres.2015.10.007 | 2015 | Amino Acid Sequence, Antifungal Agents/chemistry/*metabolism/pharmacology, Bacillales/classification/genetics/*metabolism, Fungi/drug effects, Molecular Sequence Data, *Secondary Metabolism, Sequence Alignment, Species Specificity | Phylogeny |
Biotechnology | 28439259 | Increased Biological Activity of Aneurinibacillus migulanus Strains Correlates with the Production of New Gramicidin Secondary Metabolites. | Alenezi FN, Rekik I, Chenari Bouket A, Luptakova L, Weitz HJ, Rateb ME, Jaspars M, Woodward S, Belbahri L | Front Microbiol | 10.3389/fmicb.2017.00517 | 2017 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1161 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2895) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2895 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38152 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15683 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
80611 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7123.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
80612 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID317498.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120951 | Curators of the CIP | Collection of Institut Pasteur (CIP 103841) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103841 |