Strain identifier

BacDive ID: 11380

Type strain: Yes

Species: Bacillus aneurinilyticus

Strain Designation: Murayama

Strain history: CIP <- 1994, O. Shida, Higeta Shoyu Lab., Chiba, Japan <- Y. Ito <- R. Kimura

NCBI tax ID(s): 649747 (strain), 1391 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2190

BacDive-ID: 11380

DSM-Number: 5562

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, motile

description: Bacillus aneurinilyticus Murayama is an obligate aerobe, spore-forming, mesophilic bacterium of the family Bacillaceae.

NCBI tax id

NCBI tax idMatching level
649747strain
1391species

strain history

@refhistory
2190<- NRRL; NRS 1589 <- H. Iizuka, Univ. of Tokyo, 1970; strain Murayama
67770O. Shida <-- ATCC 12856 <-- Y. Ito <-- R. Kimura.
116380CIP <- 1994, O. Shida, Higeta Shoyu Lab., Chiba, Japan <- Y. Ito <- R. Kimura

doi: 10.13145/bacdive11380.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Bacillus
  • species: Bacillus aneurinilyticus
  • full scientific name: Bacillus aneurinilyticus corrig. (ex Kimura and Aoyama 1952) Shida et al. 1994
  • synonyms

    @refsynonym
    20215Bacillus aneurinolyticus
    20215Aneurinibacillus aneurinolyticus
    20215Aneurinibacillus aneurinilyticus

@ref: 2190

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Aneurinibacillus

species: Aneurinibacillus aneurinilyticus

full scientific name: Aneurinibacillus aneurinilyticus (Shida et al. 1994) Shida et al. 1996 emend. Heyndrickx et al. 1997

strain designation: Murayama

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes92.688
69480100positive
116380yespositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2190NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38159MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116380CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2190positivegrowth30mesophilic
38159positivegrowth30mesophilic
67770positivegrowth30mesophilic
116380positivegrowth30-55
116380nogrowth10psychrophilic

culture pH

  • @ref: 116380
  • ability: positive
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 116380
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100
116380yes

compound production

  • @ref: 67770
  • compound: Thiamine hydrolase

halophily

@refsaltgrowthtested relationconcentration
116380NaClpositivegrowth0-4 %
116380NaClnogrowth6 %
116380NaClnogrowth8 %
116380NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
116380citrate-carbon source16947
116380nitrate+reduction17632
116380nitrite-reduction16301
116380nitrate-respiration17632

metabolite production

  • @ref: 116380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 116380
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
116380oxidase+
116380alcohol dehydrogenase-1.1.1.1
116380gelatinase-
116380amylase-
116380DNase+
116380caseinase-3.4.21.50
116380catalase-1.11.1.6
116380lecithinase+
116380lysine decarboxylase-4.1.1.18
116380ornithine decarboxylase-4.1.1.17
116380urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116380+/----+/---------------------------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
38159JapanJPNAsia
67770Human feces
116380JapanJPNAsiaHuman, Feces

taxonmaps

  • @ref: 69479
  • File name: preview.99_916.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_162;96_542;97_625;98_723;99_916&stattab=map
  • Last taxonomy: Aneurinibacillus
  • 16S sequence: X94194
  • Sequence Identity:
  • Total samples: 1947
  • soil counts: 881
  • aquatic counts: 218
  • animal counts: 736
  • plant counts: 112

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
21901Risk group (German classification)
1163801Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aneurinibacillus aneurinolyticus DNA for 16S ribosomal RNAD784551422ena649747
20218Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequenceAB1015921489ena649747
20218Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequence, strain:DSM 5562TAB1127241489ena649747
20218Aneurinibacillus aneurinilyticus isolate Aa15 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU723616545ena649747
20218B.aneurinolyticus 16S ribosomal RNAX941941482ena649747
20218Aneurinibacillus aneurinilyticus gene for 16S rRNA, partial sequenceAB2717551464ena649747

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aneurinibacillus aneurinilyticus ATCC 12856649747.3wgspatric649747
66792Aneurinibacillus aneurinilyticus ATCC 128562563366762draftimg649747
67770Aneurinibacillus aneurinilyticus ATCC 12856GCA_000466385scaffoldncbi649747

GC content

  • @ref: 67770
  • GC-content: 42.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes69.006no
anaerobicno96.069no
halophileno93.066no
spore-formingyes94.517no
glucose-utilyes85.93no
thermophileno98.486yes
flagellatedyes55.089no
aerobicyes81.369no
motileyes87.17no
glucose-fermentno92.231no

External links

@ref: 2190

culture collection no.: DSM 5562, ATCC 12856, CIP 104007, IAM 1077, IFO 15521, JCM 9024, NBRC 15521, NRS 1589, LMG 15531, LMG 16001, NRRL NRS-1589

straininfo link

  • @ref: 80610
  • straininfo: 10735

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2190Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5562)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5562
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38159Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15868
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80610Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID10735.1StrainInfo: A central database for resolving microbial strain identifiers
116380Curators of the CIPCollection of Institut Pasteur (CIP 104007)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104007