Strain identifier
BacDive ID: 11360
Type strain: 
Species: Herbaspirillum sp.
Strain Designation: PIV-34-1
Strain history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; PIV-34-1 <- J. Harder and Ch. Probian {2000}
NCBI tax ID(s): 1890675 (species)
General
@ref: 5479
BacDive-ID: 11360
DSM-Number: 14683
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic
description: Herbaspirillum sp. PIV-34-1 is a facultative anaerobe, mesophilic bacterium that was isolated from oats field soil.
NCBI tax id
- NCBI tax id: 1890675
- Matching level: species
strain history
- @ref: 5479
- history: <- J. Harder, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; PIV-34-1 <- J. Harder and Ch. Probian {2000}
doi: 10.13145/bacdive11360.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Herbaspirillum
- species: Herbaspirillum sp.
- full scientific name: Herbaspirillum Baldani et al. 1986
@ref: 5479
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Herbaspirillum
species: Herbaspirillum sp.
full scientific name: Herbaspirillum sp.
strain designation: PIV-34-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 5479
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 5479
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5479
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5479
- sample type: oats field soil
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Sequence information
16S sequences
- @ref: 5479
- description: Herbaspirillum sp. PIV-34-1 partial 16S rRNA gene, strain PIV-34-1
- accession: AJ505863
- length: 1477
- database: ena
- NCBI tax ID: 204462
External links
@ref: 5479
culture collection no.: DSM 14683
straininfo link
- @ref: 80591
- straininfo: 97655
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5479 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14683) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14683 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 80591 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID97655.1 | StrainInfo: A central database for resolving microbial strain identifiers |