Strain identifier

BacDive ID: 11358

Type strain: Yes

Species: Herbaspirillum huttiense

Strain Designation: 266

Strain history: CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 266

NCBI tax ID(s): 863372 (species)

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General

@ref: 3877

BacDive-ID: 11358

DSM-Number: 10281

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Herbaspirillum huttiense 266 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from distilled water.

NCBI tax id

  • NCBI tax id: 863372
  • Matching level: species

strain history

@refhistory
3877<- ATCC <- E. Leifson, strain 266
67770IAM 14941 <-- ATCC 14670 <-- E. Leifson 266.
119992CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 266

doi: 10.13145/bacdive11358.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Herbaspirillum
  • species: Herbaspirillum huttiense
  • full scientific name: Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004
  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas huttiensis

@ref: 3877

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Herbaspirillum

species: Herbaspirillum huttiense

full scientific name: Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004 emend. Dobritsa et al. 2010

strain designation: 266

type strain: yes

Morphology

cell morphology

  • @ref: 119992
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 119992
  • production: no
  • name: Pyocyanin

multimedia

  • @ref: 3877
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_10281.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3877CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
34240MEDIUM 18 - for Hydrogenophaga, Vogesella and Pseudomonas generayesDistilled water make up to (1000.000 ml);Sodium chloride (3.000 g);Agar(12.000 g);Yeast extract (3.000 g);Peptone (0.600 g)
119992CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119992CIP Medium 18yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=18

culture temp

@refgrowthtypetemperaturerange
3877positivegrowth28mesophilic
34240positivegrowth30mesophilic
67770positivegrowth25mesophilic
119992positivegrowth30mesophilic
119992nogrowth5psychrophilic
119992nogrowth41thermophilic
119992nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119992
  • oxygen tolerance: obligate aerobe

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11999216947citrate+carbon source
1199924853esculin-hydrolysis
11999217632nitrate-reduction
11999216301nitrite-reduction
11999215882phenol+degradation
11999217632nitrate-respiration

antibiotic resistance

  • @ref: 119992
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

enzymes

@refvalueactivityec
119992oxidase+
119992beta-galactosidase+3.2.1.23
119992alcohol dehydrogenase-1.1.1.1
119992gelatinase-
119992amylase-
119992caseinase-3.4.21.50
119992catalase-1.11.1.6
119992tween esterase-
119992lecithinase-
119992lysine decarboxylase-4.1.1.18
119992ornithine decarboxylase-4.1.1.17

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119992+++-+------+++-----+++--+-+++--+-+--++-++--+++-+++++-+++++-++-+++--+-----+-+++-++-+-+-+-++++-+++++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
3877distilled waterNew ZealandNZLAustralia and Oceania
47134Water,distilledNew ZealandNZLAustralia and OceaniaLower Hutt
67770Distilled waterNew ZealandNZLAustralia and Oceania
119992Environment, Distilled water

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Engineered#Industrial#Engineered product
#Engineered#Treatment#Sterilized (Desinfected)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3619.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_128;97_137;98_154;99_3619&stattab=map
  • Last taxonomy: Herbaspirillum
  • 16S sequence: AB021366
  • Sequence Identity:
  • Total samples: 1693
  • soil counts: 197
  • aquatic counts: 342
  • animal counts: 743
  • plant counts: 411

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
38771Risk group (German classification)
1199921Risk group (French classification)

Sequence information

16S sequences

  • @ref: 3877
  • description: Herbaspirillum huttiense gene for 16S rRNA, strain: ATCC 14670
  • accession: AB021366
  • length: 1490
  • database: ena
  • NCBI tax ID: 863372

GC content

@refGC-contentmethod
387762.0-62.5
6777063.3high performance liquid chromatography (HPLC)

External links

@ref: 3877

culture collection no.: DSM 10281, ATCC 14670, JCM 21423, CCUG 20333, LMG 2199, CIP 103296, IAM 14941, NBRC 102521, NCIMB 9462

straininfo link

  • @ref: 80589
  • straininfo: 4110

literature

  • topic: Phylogeny
  • Pubmed-ID: 19671717
  • title: Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov.
  • authors: Dobritsa AP, Reddy MCS, Samadpour M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.009381-0
  • year: 2009
  • mesh: Base Composition, Base Sequence, DNA Primers, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Herbaspirillum/*classification/*genetics/metabolism, Molecular Sequence Data, Peptide Fragments/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
3877Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10281)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10281
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
34240Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15077
47134Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 20333)https://www.ccug.se/strain?id=20333
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80589Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID4110.1StrainInfo: A central database for resolving microbial strain identifiers
119992Curators of the CIPCollection of Institut Pasteur (CIP 103296)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103296