Strain identifier
BacDive ID: 11358
Type strain:
Species: Herbaspirillum huttiense
Strain Designation: 266
Strain history: CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 266
NCBI tax ID(s): 863372 (species)
General
@ref: 3877
BacDive-ID: 11358
DSM-Number: 10281
keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Herbaspirillum huttiense 266 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from distilled water.
NCBI tax id
- NCBI tax id: 863372
- Matching level: species
strain history
@ref | history |
---|---|
3877 | <- ATCC <- E. Leifson, strain 266 |
67770 | IAM 14941 <-- ATCC 14670 <-- E. Leifson 266. |
119992 | CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 266 |
doi: 10.13145/bacdive11358.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Herbaspirillum
- species: Herbaspirillum huttiense
- full scientific name: Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004
synonyms
- @ref: 20215
- synonym: Pseudomonas huttiensis
@ref: 3877
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Herbaspirillum
species: Herbaspirillum huttiense
full scientific name: Herbaspirillum huttiense (Leifson 1962) Ding and Yokota 2004 emend. Dobritsa et al. 2010
strain designation: 266
type strain: yes
Morphology
cell morphology
- @ref: 119992
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 119992
- production: no
- name: Pyocyanin
multimedia
- @ref: 3877
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_10281.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3877 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
34240 | MEDIUM 18 - for Hydrogenophaga, Vogesella and Pseudomonas genera | yes | Distilled water make up to (1000.000 ml);Sodium chloride (3.000 g);Agar(12.000 g);Yeast extract (3.000 g);Peptone (0.600 g) | |
119992 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
119992 | CIP Medium 18 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=18 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3877 | positive | growth | 28 | mesophilic |
34240 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
119992 | positive | growth | 30 | mesophilic |
119992 | no | growth | 5 | psychrophilic |
119992 | no | growth | 41 | thermophilic |
119992 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119992
- oxygen tolerance: obligate aerobe
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
119992 | 16947 | citrate | + | carbon source |
119992 | 4853 | esculin | - | hydrolysis |
119992 | 17632 | nitrate | - | reduction |
119992 | 16301 | nitrite | - | reduction |
119992 | 15882 | phenol | + | degradation |
119992 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 119992
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
119992 | oxidase | + | |
119992 | beta-galactosidase | + | 3.2.1.23 |
119992 | alcohol dehydrogenase | - | 1.1.1.1 |
119992 | gelatinase | - | |
119992 | amylase | - | |
119992 | caseinase | - | 3.4.21.50 |
119992 | catalase | - | 1.11.1.6 |
119992 | tween esterase | - | |
119992 | lecithinase | - | |
119992 | lysine decarboxylase | - | 4.1.1.18 |
119992 | ornithine decarboxylase | - | 4.1.1.17 |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119992 | + | + | + | - | + | - | - | - | - | - | - | + | + | + | - | - | - | - | - | + | + | + | - | - | + | - | + | + | + | - | - | + | - | + | - | - | + | + | - | + | + | - | - | + | + | + | - | + | + | + | + | + | - | + | + | + | + | + | - | + | + | - | + | + | + | - | - | + | - | - | - | - | - | + | - | + | + | + | - | + | + | - | + | - | + | - | + | - | + | + | + | + | - | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
3877 | distilled water | New Zealand | NZL | Australia and Oceania | |
47134 | Water,distilled | New Zealand | NZL | Australia and Oceania | Lower Hutt |
67770 | Distilled water | New Zealand | NZL | Australia and Oceania | |
119992 | Environment, Distilled water |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Engineered | #Industrial | #Engineered product |
#Engineered | #Treatment | #Sterilized (Desinfected) |
taxonmaps
- @ref: 69479
- File name: preview.99_3619.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_128;97_137;98_154;99_3619&stattab=map
- Last taxonomy: Herbaspirillum
- 16S sequence: AB021366
- Sequence Identity:
- Total samples: 1693
- soil counts: 197
- aquatic counts: 342
- animal counts: 743
- plant counts: 411
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3877 | 1 | Risk group (German classification) |
119992 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 3877
- description: Herbaspirillum huttiense gene for 16S rRNA, strain: ATCC 14670
- accession: AB021366
- length: 1490
- database: ena
- NCBI tax ID: 863372
GC content
@ref | GC-content | method |
---|---|---|
3877 | 62.0-62.5 | |
67770 | 63.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 3877
culture collection no.: DSM 10281, ATCC 14670, JCM 21423, CCUG 20333, LMG 2199, CIP 103296, IAM 14941, NBRC 102521, NCIMB 9462
straininfo link
- @ref: 80589
- straininfo: 4110
literature
- topic: Phylogeny
- Pubmed-ID: 19671717
- title: Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov.
- authors: Dobritsa AP, Reddy MCS, Samadpour M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.009381-0
- year: 2009
- mesh: Base Composition, Base Sequence, DNA Primers, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Herbaspirillum/*classification/*genetics/metabolism, Molecular Sequence Data, Peptide Fragments/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3877 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10281) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10281 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
34240 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15077 | ||
47134 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 20333) | https://www.ccug.se/strain?id=20333 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
80589 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4110.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
119992 | Curators of the CIP | Collection of Institut Pasteur (CIP 103296) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103296 |