Strain identifier
BacDive ID: 11348
Type strain:
Species: Oxalobacter formigenes
Strain Designation: BA-2
Strain history: <- M.J. Allison, BA-2
NCBI tax ID(s): 649759 (strain), 847 (species)
version 8.1 (current version)
General
@ref: 1663
BacDive-ID: 11348
DSM-Number: 4420
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Oxalobacter formigenes BA-2 is an anaerobe, mesophilic bacterium that was isolated from human faeces.
NCBI tax id
NCBI tax id | Matching level |
---|---|
649759 | strain |
847 | species |
strain history
- @ref: 1663
- history: <- M.J. Allison, BA-2
doi: 10.13145/bacdive11348.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Oxalobacter
- species: Oxalobacter formigenes
- full scientific name: Oxalobacter formigenes Allison et al. 1985
@ref: 1663
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Oxalobacter
species: Oxalobacter formigenes
full scientific name: Oxalobacter formigenes Allison et al. 1985
strain designation: BA-2
type strain: no
Culture and growth conditions
culture medium
- @ref: 1663
- name: OXALOBACTER MEDIUM (DSMZ Medium 419)
- growth: yes
- link: https://mediadive.dsmz.de/medium/419
- composition: Name: OXALOBACTER MEDIUM (DSMZ Medium 419) Composition: Na-oxalate 4.99002 g/l Na2CO3 3.99202 g/l Trypticase peptone 0.998004 g/l Yeast extract 0.998004 g/l Na-acetate 0.818363 g/l L-Cysteine HCl x H2O 0.499002 g/l (NH4)2SO4 0.499002 g/l KH2PO4 0.249501 g/l K2HPO4 0.249501 g/l MgSO4 x 7 H2O 0.0249501 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l NaOH 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l H3BO3 5.98802e-06 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
culture temp
- @ref: 1663
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1663
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1663
- sample type: human faeces
- geographic location: Iowa
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_7682.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_2280;97_2765;98_5615;99_7682&stattab=map
- Last taxonomy: Oxalobacter
- 16S sequence: HG917902
- Sequence Identity:
- Total samples: 1203
- soil counts: 13
- aquatic counts: 17
- animal counts: 1169
- plant counts: 4
Safety information
risk assessment
- @ref: 1663
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1663
- description: Oxalobacter formigenes partial 16S rRNA gene, strain DSM 4420, isolate BA-2
- accession: HG917902
- length: 1504
- database: ena
- NCBI tax ID: 847
GC content
- @ref: 1663
- GC-content: 50.5
External links
@ref: 1663
culture collection no.: DSM 4420
straininfo link
- @ref: 80581
- straininfo: 391369
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 17499563 | Determination of oxalyl-coenzyme A decarboxylase activity in Oxalobacter formigenes and Lactobacillus acidophilus by capillary electrophoresis. | Bendazzoli C, Turroni S, Gotti R, Olmo S, Brigidi P, Cavrini V | J Chromatogr B Analyt Technol Biomed Life Sci | 10.1016/j.jchromb.2007.04.027 | 2007 | Calibration, Carboxy-Lyases/*metabolism, Electrophoresis, Capillary/*methods, Kinetics, Lactobacillus acidophilus/*enzymology, Oxalobacter formigenes/*enzymology, Reproducibility of Results, Sensitivity and Specificity | Metabolism |
Metabolism | 25291139 | Screening of different probiotic strains for their in vitro ability to metabolise oxalates: any prospective use in humans? | Mogna L, Pane M, Nicola S, Raiteri E | J Clin Gastroenterol | 10.1097/MCG.0000000000000228 | 2014 | Bifidobacterium/classification/*metabolism, Chromatography, High Pressure Liquid, Chromatography, Reverse-Phase, Humans, Intestines/*microbiology, Kinetics, Lactobacillus/classification/*metabolism, Lithiasis/diagnosis/microbiology/*therapy, Oxalic Acid/*metabolism, Probiotics/*therapeutic use | Phylogeny |
Metabolism | 33953803 | Evaluation of Oxalobacter formigenes DSM 4420 biodegradation activity for high oxalate media content: An in vitro model. | Karamad D, Khosravi-Darani K, Hosseini H, Tavasoli S, Miller AW | Biocatal Agric Biotechnol | 10.1016/j.bcab.2019.101378 | 2019 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1663 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4420) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4420 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
80581 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID391369.1 | StrainInfo: A central database for resolving microbial strain identifiers |