Strain identifier
BacDive ID: 11346
Type strain: 
Species: Oxalicibacterium horti
Strain Designation: OD1
Strain history: <- N. Sahin, Mugla University, Kötekli; OD1 <- NBRC <- G. C. N. Jayasuriya
NCBI tax ID(s): 573739 (species)
version 8.1 (current version)
General
@ref: 15854
BacDive-ID: 11346
DSM-Number: 21640
keywords: 16S sequence, Bacteria, mesophilic
description: Oxalicibacterium horti OD1 is a mesophilic bacterium that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 573739
- Matching level: species
strain history
- @ref: 15854
- history: <- N. Sahin, Mugla University, Kötekli; OD1 <- NBRC <- G. C. N. Jayasuriya
doi: 10.13145/bacdive11346.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Oxalicibacterium
- species: Oxalicibacterium horti
- full scientific name: Oxalicibacterium horti Sahin et al. 2009
@ref: 15854
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Oxalicibacterium
species: Oxalicibacterium horti
full scientific name: Oxalicibacterium horti Sahin et al. 2009
strain designation: OD1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15854
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 15854
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 15854
- sample type: garden soil
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Safety information
risk assessment
- @ref: 15854
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Oxalicibacterium horti gene for 16S rRNA, partial sequence, strain: NBRC 13594 | AB680454 | 1462 | ena | 573739 |
| 15854 | Oxalicibacterium horti gene for 16S rRNA, partial sequence | AB469786 | 1489 | ena | 573739 |
GC content
- @ref: 15854
- GC-content: 59.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 15854
culture collection no.: DSM 21640, NBRC 13594
straininfo link
- @ref: 80579
- straininfo: 59540
literature
- topic: Phylogeny
- Pubmed-ID: 19459944
- title: Description of Oxalicibacterium horti sp. nov. and Oxalicibacterium faecigallinarum sp. nov., new aerobic, yellow-pigmented, oxalotrophic bacteria.
- authors: Sahin N, Portillo MC, Kato Y, Schumann P
- journal: FEMS Microbiol Lett
- DOI: 10.1111/j.1574-6968.2009.01636.x
- year: 2009
- mesh: Aerobiosis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oxaloacetates/*metabolism, Oxalobacteraceae/*classification/genetics/isolation & purification/*physiology, Phylogeny, Pigments, Biological/biosynthesis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 15854 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21640) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21640 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 80579 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID59540.1 | StrainInfo: A central database for resolving microbial strain identifiers |