Strain identifier

BacDive ID: 11345

Type strain: Yes

Species: Oxalicibacterium faecigallinarum

Strain Designation: YOx

Strain history: <- N. Sahin, Univ. Mugla, Turkey <- CCM <- T. S. Chandra; YOx (Pseudomonas sp.)

NCBI tax ID(s): 573741 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15855

BacDive-ID: 11345

DSM-Number: 21641

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Oxalicibacterium faecigallinarum YOx is a mesophilic, motile bacterium that was isolated from chicken dung.

NCBI tax id

  • NCBI tax id: 573741
  • Matching level: species

strain history

  • @ref: 15855
  • history: <- N. Sahin, Univ. Mugla, Turkey <- CCM <- T. S. Chandra; YOx (Pseudomonas sp.)

doi: 10.13145/bacdive11345.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Oxalicibacterium
  • species: Oxalicibacterium faecigallinarum
  • full scientific name: Oxalicibacterium faecigallinarum Sahin et al. 2009

@ref: 15855

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Oxalicibacterium

species: Oxalicibacterium faecigallinarum

full scientific name: Oxalicibacterium faecigallinarum Sahin et al. 2009

strain designation: YOx

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.479
6948099.973negative

Culture and growth conditions

culture medium

  • @ref: 15855
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 15855
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no100

Isolation, sampling and environmental information

isolation

  • @ref: 15855
  • sample type: chicken dung
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Birds#Chicken
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 15855
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15855
  • description: Oxalicibacterium faecigallinarum gene for 16S rRNA, partial sequence
  • accession: AB469788
  • length: 1489
  • database: ena
  • NCBI tax ID: 573741

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Oxalicibacterium faecigallinarum CCM 2767GCA_014635705scaffoldncbi573741
66792Oxalicibacterium faecigallinarum strain CCM 2767573741.3wgspatric573741

GC content

  • @ref: 15855
  • GC-content: 55.6
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes58.116no
gram-positiveno98.643no
anaerobicno97.956no
aerobicyes87.503no
halophileno92.749no
spore-formingno94.334no
thermophileno98.963no
glucose-utilno64.816no
motileyes88.09no
glucose-fermentno91.836no

External links

@ref: 15855

culture collection no.: DSM 21641, CCM 2767

straininfo link

  • @ref: 80578
  • straininfo: 66667

literature

  • topic: Phylogeny
  • Pubmed-ID: 19459944
  • title: Description of Oxalicibacterium horti sp. nov. and Oxalicibacterium faecigallinarum sp. nov., new aerobic, yellow-pigmented, oxalotrophic bacteria.
  • authors: Sahin N, Portillo MC, Kato Y, Schumann P
  • journal: FEMS Microbiol Lett
  • DOI: 10.1111/j.1574-6968.2009.01636.x
  • year: 2009
  • mesh: Aerobiosis, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oxaloacetates/*metabolism, Oxalobacteraceae/*classification/genetics/isolation & purification/*physiology, Phylogeny, Pigments, Biological/biosynthesis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
15855Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21641)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21641
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80578Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID66667.1StrainInfo: A central database for resolving microbial strain identifiers