Strain identifier

BacDive ID: 11330

Type strain: Yes

Species: Massilia brevitalea

Strain Designation: byr23-80

Strain history: <- J. Overmann; byr23-80 {2007} <- D. Zul

NCBI tax ID(s): 442526 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7779

BacDive-ID: 11330

DSM-Number: 18925

keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Massilia brevitalea byr23-80 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from lysimeter soil.

NCBI tax id

  • NCBI tax id: 442526
  • Matching level: species

strain history

  • @ref: 7779
  • history: <- J. Overmann; byr23-80 {2007} <- D. Zul

doi: 10.13145/bacdive11330.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia brevitalea
  • full scientific name: Massilia brevitalea Zul et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Telluria brevitalea

@ref: 7779

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia brevitalea

full scientific name: Massilia brevitalea Zul et al. 2008

strain designation: byr23-80

type strain: yes

Morphology

cell morphology

  • @ref: 32422
  • gram stain: negative
  • cell length: 1.75 µm
  • cell width: 0.85 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32422
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7779
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7779positivegrowth15psychrophilic
32422positivegrowth04-30
32422positiveoptimum15psychrophilic

culture pH

@refabilitytypepHPH range
32422positivegrowth06-10alkaliphile
32422positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 32422
  • oxygen tolerance: aerobe

halophily

  • @ref: 32422
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3242217057cellobiose+carbon source
3242228260galactose+carbon source
3242217234glucose+carbon source
3242217306maltose+carbon source
32422506227N-acetylglucosamine+carbon source
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
7779catalase+1.11.1.6
7779cytochrome-c oxidase+1.9.3.1
32422acid phosphatase+3.1.3.2
32422alkaline phosphatase+3.1.3.1
32422catalase+1.11.1.6
32422urease+3.5.1.5
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
7779+----++/-------+-+++-+/-

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
7779-------------------------+-++-------+-------------
7779-----------+-----------+-+-++-------+--+---------+

Isolation, sampling and environmental information

isolation

  • @ref: 7779
  • sample type: lysimeter soil
  • geographic location: Botanical Garden at the University of Bayreuth
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 7779
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7779
  • description: Massilia brevitalea strain byr23-80 16S ribosomal RNA gene, partial sequence
  • accession: EF546777
  • length: 1455
  • database: ena
  • NCBI tax ID: 442526

GC content

@refGC-contentmethod
777965.3high performance liquid chromatography (HPLC)
3242265.3

External links

@ref: 7779

culture collection no.: DSM 18925, ATCC BAA 1465, CCM 8559

straininfo link

  • @ref: 80563
  • straininfo: 399303

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18450722Massilia brevitalea sp. nov., a novel betaproteobacterium isolated from lysimeter soil.Zul D, Wanner G, Overmann JInt J Syst Evol Microbiol10.1099/ijs.0.65473-02008Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/*analysis, *Soil Microbiology, Species Specificity, *WaterGenetics
Phylogeny19783608Massilia jejuensis sp. nov. and Naxibacter suwonensis sp. nov., isolated from air samples.Weon HY, Yoo SH, Kim SJ, Kim YS, Anandham R, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.015479-02009*Air Microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oxalobacteraceae/*classification/genetics/*isolation & purification/metabolism, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7779Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18925)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18925
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32422Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2864528776041
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
80563Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399303.1StrainInfo: A central database for resolving microbial strain identifiers