Strain identifier

BacDive ID: 11314

Type strain: No

Species: Janthinobacterium lividum

Strain history: CIP <- 2000, NCIMB, Pseudomonas mephitica <- NRRL

NCBI tax ID(s): 29581 (species)

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General

@ref: 6389

BacDive-ID: 11314

DSM-Number: 16524

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Janthinobacterium lividum DSM 16524 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from butter with skunk-like odor.

NCBI tax id

  • NCBI tax id: 29581
  • Matching level: species

strain history

@refhistory
6389<- CIP <- NCIMB <- NRRL
67770CIP 106720 <-- NCIMB 9672 <-- NRRL B-75.
120638CIP <- 2000, NCIMB, Pseudomonas mephitica <- NRRL

doi: 10.13145/bacdive11314.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Janthinobacterium
  • species: Janthinobacterium lividum
  • full scientific name: Janthinobacterium lividum (Eisenberg 1891) De Ley et al. 1978 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Pseudomonas mephitica
    20215Bacillus lividus

@ref: 6389

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Janthinobacterium

species: Janthinobacterium lividum

full scientific name: Janthinobacterium lividum (Eisenberg 1891) De Ley et al. 1978

type strain: no

Morphology

cell morphology

  • @ref: 120638
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 120638
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6389CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
37248MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120638CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6389positivegrowth28mesophilic
37248positivegrowth25mesophilic
44556positivegrowth22-28
67770positivegrowth25mesophilic
120638positivegrowth5-30
120638nogrowth37mesophilic
120638nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
44556aerobe
120638facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
120638NaClpositivegrowth0-6 %
120638NaClnogrowth8 %
120638NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate+reduction
12063816947citrate+carbon source
12063817632nitrate+reduction
12063816301nitrite-reduction
12063817632nitrate+respiration

antibiotic resistance

  • @ref: 120638
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12063835581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
120638oxidase+
120638beta-galactosidase-3.2.1.23
120638alcohol dehydrogenase-1.1.1.1
120638gelatinase+/-
120638amylase-
120638DNase-
120638caseinase-3.4.21.50
120638catalase+1.11.1.6
120638tween esterase-
120638lecithinase-
120638lipase-
120638lysine decarboxylase-4.1.1.18
120638ornithine decarboxylase-4.1.1.17
120638protease-
120638tryptophan deaminase-
120638urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120638-+++++++++++----+---

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6389+-+/---+--++++-+-++++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120638+++-+--+-++----+--++++----+-+--+++--+--+------+--++--+--+----+---++--------++--+++----+-+++-+++++--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6389butter with skunk-like odorUSAUSANorth America
44556Butter with skunk-like odorUSAUSANorth America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Dairy product

taxonmaps

  • @ref: 69479
  • File name: preview.99_1728.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_429;97_540;98_623;99_1728&stattab=map
  • Last taxonomy: Oxalobacteraceae
  • 16S sequence: AM748811
  • Sequence Identity:
  • Total samples: 6168
  • soil counts: 1725
  • aquatic counts: 1928
  • animal counts: 1687
  • plant counts: 828

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
63891Risk group (German classification)
1206381Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Janthinobacterium lividum gene for 16S rRNA, strain: ATCC 33665AB0213881503ena29581
67770Janthinobacterium lividum partial 16S rRNA gene, strain CCUG 2513AM7488111412ena29581

External links

@ref: 6389

culture collection no.: DSM 16524, CIP 106720, NCIMB 9675, NRRL B-75, CCUG 2513, ATCC 33665, LMG 21632, JCM 13308, NCIMB 9672

straininfo link

  • @ref: 80547
  • straininfo: 40609

literature

  • topic: Phylogeny
  • Pubmed-ID: 18175698
  • title: Reclassification of Pseudomonas mephitica Claydon and Hammer 1939 as a later heterotypic synonym of Janthinobacterium lividum (Eisenberg 1891) De Ley et al. 1978.
  • authors: Kampfer P, Falsen E, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65450-0
  • year: 2008
  • mesh: Bacterial Typing Techniques, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Oxalobacteraceae/chemistry/*classification/genetics/physiology, Phenotype, Phylogeny, Pseudomonas/chemistry/*classification/genetics/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
6389Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16524)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16524
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37248Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18882
44556Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 2513)https://www.ccug.se/strain?id=2513
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80547Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40609.1StrainInfo: A central database for resolving microbial strain identifiers
120638Curators of the CIPCollection of Institut Pasteur (CIP 106720)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106720