Strain identifier
BacDive ID: 11312
Type strain:
Species: Duganella phyllosphaerae
Strain Designation: T54
Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; T54 <- S. Wellner
NCBI tax ID(s): 762836 (species)
General
@ref: 17414
BacDive-ID: 11312
DSM-Number: 23865
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Duganella phyllosphaerae T54 is an aerobe, mesophilic, motile bacterium that was isolated from Trifolium repens leaf surface.
NCBI tax id
- NCBI tax id: 762836
- Matching level: species
strain history
- @ref: 17414
- history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; T54 <- S. Wellner
doi: 10.13145/bacdive11312.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Duganella
- species: Duganella phyllosphaerae
- full scientific name: Duganella phyllosphaerae Kämpfer et al. 2012
@ref: 17414
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Duganella
species: Duganella phyllosphaerae
full scientific name: Duganella phyllosphaerae Kämpfer et al. 2012
strain designation: T54
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.539 | |
69480 | 99.998 | negative |
colony morphology
- @ref: 62195
- incubation period: 2 days
Culture and growth conditions
culture medium
- @ref: 17414
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17414 | positive | growth | 28 | mesophilic |
62195 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62195
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|---|
17414 | Trifolium repens leaf surface | Trifolium repens | Hainich-Dün region | Germany | DEU | Europe | |
62195 | Leaf surface (Trifolium repens) | Hainich | Germany | DEU | Europe | 2000 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
taxonmaps
- @ref: 69479
- File name: preview.99_7363.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_429;97_1521;98_1852;99_7363&stattab=map
- Last taxonomy: Duganella
- 16S sequence: FR852575
- Sequence Identity:
- Total samples: 18206
- soil counts: 5243
- aquatic counts: 3834
- animal counts: 4287
- plant counts: 4842
Safety information
risk assessment
- @ref: 17414
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17414
- description: Duganella phyllosphaerae partial 16S rRNA gene, type strain T54T
- accession: FR852575
- length: 1357
- database: ena
- NCBI tax ID: 762836
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Duganella phyllosphaerae T54 | GCA_001758785 | contig | ncbi | 762836 |
66792 | Duganella phyllosphaerae strain T54 | 762836.10 | wgs | patric | 762836 |
66792 | Duganella phyllosphaerae T54, DSM 23865 | 2623620540 | draft | img | 762836 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.429 | no |
flagellated | yes | 73.757 | no |
gram-positive | no | 98.564 | no |
anaerobic | no | 98.741 | yes |
aerobic | yes | 90.012 | yes |
halophile | no | 93.146 | no |
spore-forming | no | 94.112 | no |
glucose-util | yes | 93.235 | no |
thermophile | no | 99.55 | yes |
glucose-ferment | no | 90.794 | no |
External links
@ref: 17414
culture collection no.: DSM 23865, CCM 7824, LMG 25994, CCUG 60090
straininfo link
- @ref: 80545
- straininfo: 370789
literature
- topic: Phylogeny
- Pubmed-ID: 22169565
- title: Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov.
- authors: Kampfer P, Wellner S, Lohse K, Martin K, Lodders N
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2011.10.003
- year: 2011
- mesh: Bacterial Typing Techniques, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/chemistry/*classification/genetics/*isolation & purification, Phospholipids/analysis, Phylogeny, Plant Leaves/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Trifolium/*microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
17414 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23865) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23865 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
62195 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 60090) | https://www.ccug.se/strain?id=60090 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
80545 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID370789.1 | StrainInfo: A central database for resolving microbial strain identifiers |