Strain identifier

BacDive ID: 11307

Type strain: Yes

Species: Herminiimonas glaciei

Strain Designation: UMB49

Culture col. no.: DSM 21140, ATCC BAA 1623, CCUG 59859

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General

@ref: 15563

BacDive-ID: 11307

DSM-Number: 21140

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, motile, rod-shaped

description: Herminiimonas glaciei UMB49 is an aerobe, mesophilic, gram-negative bacterium that was isolated from ice core of Greenland Glacier at 3042 m depth.

strain history: <- J. Loveland-Curtze, Pennsylvania University <- V. I. Miteva, Pennsylvania University

doi: 10.13145/bacdive11307.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Herminiimonas
  • species: Herminiimonas glaciei
  • full scientific name: Herminiimonas glaciei Loveland-Curtze et al. 2009

@ref: 15563

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Herminiimonas

species: Herminiimonas glaciei

full scientific name: Herminiimonas glaciei Loveland-Curtze et al. 2009

strain designation: UMB49

type strain: yes

Morphology

cell morphology

  • @ref: 28924
  • gram stain: negative
  • cell length: 0.7 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 28924
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15563
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1a.pdf

culture temp

@refgrowthtypetemperaturerange
15563positivegrowth28mesophilic
28924positivegrowth01-35
28924positiveoptimum30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 28924
  • oxygen tolerance: aerobe

spore formation

  • @ref: 28924
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2892416449alanine+carbon source
2892422599arabinose+carbon source
2892416947citrate+carbon source
2892433984fucose+carbon source
2892428260galactose+carbon source
2892424996lactate+carbon source
2892425115malate+carbon source
2892433942ribose+carbon source
2892430031succinate+carbon source
2892418222xylose+carbon source

enzymes

@refvalueactivityec
28924catalase+1.11.1.6
28924cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
15563ice core of Greenland Glacier at 3042 m depthGreenlandGRLNorth America
62136Ice core of Greenland glacier at 3042 m depthGreenlandGRLNorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Glacier
#Environmental#Aquatic#Ice
#Environmental#Terrestrial#Core sample

Safety information

risk assessment

  • @ref: 15563
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15563
  • description: Herminiimonas glaciei strain UMB49 16S ribosomal RNA gene, partial sequence
  • accession: EU489741
  • length: 1434
  • database: ena
  • NCBI tax ID: 523788

GC content

@refGC-contentmethod
1556359.0thermal denaturation, midpoint method (Tm)
2892459

External links

@ref: 15563

culture collection no.: DSM 21140, ATCC BAA 1623, CCUG 59859

straininfo link

@refpassport
20218http://www.straininfo.net/strains/842106
20218http://www.straininfo.net/strains/842105

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15563Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21140)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21140
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2536310.1099/ijs.0.001685-0
28924Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25363
62136Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59859)https://www.ccug.se/strain?id=59859