Strain identifier
BacDive ID: 11307
Type strain: 
Species: Herminiimonas glaciei
Strain Designation: UMB49
Culture col. no.: DSM 21140, ATCC BAA 1623, CCUG 59859
General
@ref: 15563
BacDive-ID: 11307
DSM-Number: 21140
keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, motile, rod-shaped
description: Herminiimonas glaciei UMB49 is an aerobe, mesophilic, gram-negative bacterium that was isolated from ice core of Greenland Glacier at 3042 m depth.
strain history: <- J. Loveland-Curtze, Pennsylvania University <- V. I. Miteva, Pennsylvania University
doi: 10.13145/bacdive11307.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Herminiimonas
- species: Herminiimonas glaciei
- full scientific name: Herminiimonas glaciei Loveland-Curtze et al. 2009
@ref: 15563
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Herminiimonas
species: Herminiimonas glaciei
full scientific name: Herminiimonas glaciei Loveland-Curtze et al. 2009
strain designation: UMB49
type strain: yes
Morphology
cell morphology
- @ref: 28924
- gram stain: negative
- cell length: 0.7 µm
- cell width: 0.35 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 28924
- production: yes
Culture and growth conditions
culture medium
- @ref: 15563
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1a.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15563 | positive | growth | 28 | mesophilic |
| 28924 | positive | growth | 01-35 | |
| 28924 | positive | optimum | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 28924
- oxygen tolerance: aerobe
spore formation
- @ref: 28924
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28924 | 16449 | alanine | + | carbon source |
| 28924 | 22599 | arabinose | + | carbon source |
| 28924 | 16947 | citrate | + | carbon source |
| 28924 | 33984 | fucose | + | carbon source |
| 28924 | 28260 | galactose | + | carbon source |
| 28924 | 24996 | lactate | + | carbon source |
| 28924 | 25115 | malate | + | carbon source |
| 28924 | 33942 | ribose | + | carbon source |
| 28924 | 30031 | succinate | + | carbon source |
| 28924 | 18222 | xylose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 28924 | catalase | + | 1.11.1.6 |
| 28924 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 15563 | ice core of Greenland Glacier at 3042 m depth | Greenland | GRL | North America |
| 62136 | Ice core of Greenland glacier at 3042 m depth | Greenland | GRL | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Glacier |
| #Environmental | #Aquatic | #Ice |
| #Environmental | #Terrestrial | #Core sample |
Safety information
risk assessment
- @ref: 15563
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15563
- description: Herminiimonas glaciei strain UMB49 16S ribosomal RNA gene, partial sequence
- accession: EU489741
- length: 1434
- database: ena
- NCBI tax ID: 523788
GC content
| @ref | GC-content | method |
|---|---|---|
| 15563 | 59.0 | thermal denaturation, midpoint method (Tm) |
| 28924 | 59 |
External links
@ref: 15563
culture collection no.: DSM 21140, ATCC BAA 1623, CCUG 59859
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/842106 |
| 20218 | http://www.straininfo.net/strains/842105 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 15563 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21140) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21140 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 25363 | 10.1099/ijs.0.001685-0 | ||||||
| 28924 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25363 | |||
| 62136 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 59859) | https://www.ccug.se/strain?id=59859 |