Strain identifier

BacDive ID: 11300

Type strain: No

Species: Opitutus sp.

Strain Designation: VeGlc2

Strain history: <- P. Janssen, Max-Planck-Institut für Terrestrische Mikrobiologie, Marburg, Germany; VeGlc2 <- P. Janssen {1995}

NCBI tax ID(s): 1913982 (species)

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General

@ref: 5346

BacDive-ID: 11300

DSM-Number: 14424

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Opitutus sp. VeGlc2 is an anaerobe, mesophilic bacterium that was isolated from anoxic soil.

NCBI tax id

  • NCBI tax id: 1913982
  • Matching level: species

strain history

  • @ref: 5346
  • history: <- P. Janssen, Max-Planck-Institut für Terrestrische Mikrobiologie, Marburg, Germany; VeGlc2 <- P. Janssen {1995}

doi: 10.13145/bacdive11300.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/verrucomicrobiota
  • domain: Bacteria
  • phylum: Verrucomicrobiota
  • class: Opitutia
  • order: Opitutales
  • family: Opitutaceae
  • genus: Opitutus
  • species: Opitutus sp.
  • full scientific name: Opitutus Chin et al. 2001

@ref: 5346

domain: Bacteria

phylum: Verrucomicrobia

class: Opitutae

order: Opitutales

family: Opitutaceae

genus: Opitutus

species: Opitutus sp.

full scientific name: Opitutus sp.

strain designation: VeGlc2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5346
  • name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/503
  • composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Glucose 4.98504 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

  • @ref: 5346
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5346
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5346
  • sample type: anoxic soil
  • geographic location: Vercelli
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_181851.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_382;96_14182;97_78283;98_118543;99_181851&stattab=map
  • Last taxonomy: Opitutus
  • 16S sequence: X99390
  • Sequence Identity:
  • Total samples: 4
  • soil counts: 1
  • aquatic counts: 2
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 5346
  • description: Opitutus sp. VeGlc2 16S rRNA gene, strain VeGlc2
  • accession: X99390
  • length: 1511
  • database: ena
  • NCBI tax ID: 134634

External links

@ref: 5346

culture collection no.: DSM 14424

straininfo link

  • @ref: 80533
  • straininfo: 113536

Reference

@idauthorscataloguedoi/urltitle
5346Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14424)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14424
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113536.1StrainInfo: A central database for resolving microbial strain identifiers