Strain identifier

BacDive ID: 11285

Type strain: Yes

Species: Oceanobacter kriegii

Strain history: CIP <- 1990, NCIMB <- ATCC <- P. Baumann: strain 197, unidentified bacterium

NCBI tax ID(s): 1122615 (strain), 64972 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2578

BacDive-ID: 11285

DSM-Number: 6294

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Oceanobacter kriegii DSM 6294 is a mesophilic, motile bacterium that was isolated from seawater.

NCBI tax id

NCBI tax idMatching level
64972species
1122615strain

strain history

@refhistory
2578<- NCIMB <- ATCC <- P. Baumann
120500CIP <- 1990, NCIMB <- ATCC <- P. Baumann: strain 197, unidentified bacterium

doi: 10.13145/bacdive11285.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Oceanobacter
  • species: Oceanobacter kriegii
  • full scientific name: Oceanobacter kriegii (Bowditch et al. 1984) Satomi et al. 2002

  • synonyms

    • @ref: 20215
    • synonym: Oceanospirillum kriegii

@ref: 2578

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Oceanobacter

species: Oceanobacter kriegii

full scientific name: Oceanobacter kriegii (Bowditch et al. 1984) Satomi et al. 2002

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.325
6948099.971negative

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_6294_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6294_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6294_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_6294_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2578BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
34265Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120500CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
2578positivegrowth25mesophilic
34265positivegrowth25mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.97

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
2578seawaterHawaii, OahuUSAUSANorth America
120500Environment, SeawaterOahu, HawaiiUnited States of AmericaUSANorth America1972

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_84994.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_306;96_35446;97_45002;98_58889;99_84994&stattab=map
  • Last taxonomy: Oceanobacter kriegii subclade
  • 16S sequence: AB006767
  • Sequence Identity:
  • Total samples: 760
  • soil counts: 10
  • aquatic counts: 658
  • animal counts: 88
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
25781Risk group (German classification)
1205001Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Oceanobacter kriegii gene for 16S rRNA, partial sequence, strain: NBRC 15467AB6808651456ena64972
2578Oceanobacter kriegii gene for 16S rRNA, partial sequence, strain: IFO 15467AB0067671452ena64972

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Oceanobacter kriegii DSM 6294GCA_000422845scaffoldncbi1122615
66792Oceanobacter kriegii DSM 62941122615.3wgspatric1122615
66792Oceanobacter kriegii DSM 62942523231065draftimg1122615

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.486no
flagellatedyes92.039no
gram-positiveno98.843no
anaerobicno98.593no
aerobicyes91.436no
halophileyes81.016no
spore-formingno95.583no
glucose-utilyes79.771no
thermophileno98.875no
glucose-fermentno91no

External links

@ref: 2578

culture collection no.: DSM 6294, ATCC 27133, NCIMB 2042, CIP 103443, CCUG 16057, LMG 6238

straininfo link

  • @ref: 80518
  • straininfo: 3654

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2578Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6294)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6294
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34265Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15241
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80518Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3654.1StrainInfo: A central database for resolving microbial strain identifiers
120500Curators of the CIPCollection of Institut Pasteur (CIP 103443)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103443