Strain identifier
BacDive ID: 11278
Type strain: 
Species: Marinospirillum alkaliphilum
Strain Designation: Z4
Strain history: W. Zhang Z4.
NCBI tax ID(s): 1122209 (strain), 148454 (species)
version 8.1 (current version)
General
@ref: 15852
BacDive-ID: 11278
DSM-Number: 21637
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Marinospirillum alkaliphilum Z4 is a mesophilic, motile bacterium that was isolated from Hoaji soda lake.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122209 | strain |
| 148454 | species |
strain history
| @ref | history |
|---|---|
| 15852 | <- JCM <- W. Zhang; Z4 |
| 67770 | W. Zhang Z4. |
doi: 10.13145/bacdive11278.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Marinospirillum
- species: Marinospirillum alkaliphilum
- full scientific name: Marinospirillum alkaliphilum Zhang et al. 2002
@ref: 15852
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinospirillum
species: Marinospirillum alkaliphilum
full scientific name: Marinospirillum alkaliphilum Zhang et al. 2002
strain designation: Z4
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.817 | |
| 69480 | 99.995 | negative |
Culture and growth conditions
culture medium
- @ref: 15852
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15852 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.988 |
observation
- @ref: 67770
- observation: quinones: Q-8, MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15852 | Hoaji soda lake | Inner Mongolia Autonomous Region | China | CHN | Asia |
| 67770 | Hoaji soda lake in Inner Mongolia Autonomous Region | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_46370.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15849;96_17615;97_21702;98_27235;99_46370&stattab=map
- Last taxonomy: Marinospirillum alkaliphilum subclade
- 16S sequence: AF275713
- Sequence Identity:
- Total samples: 208
- soil counts: 27
- aquatic counts: 46
- animal counts: 36
- plant counts: 99
Safety information
risk assessment
- @ref: 15852
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15852
- description: Unidentified Hailaer soda lake bacterium Z4 16S ribosomal RNA gene, partial sequence
- accession: AF275713
- length: 1437
- database: ena
- NCBI tax ID: 148454
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinospirillum alkaliphilum DSM 21637 | 1122209.3 | wgs | patric | 1122209 |
| 66792 | Marinospirillum alkaliphilum DSM 21637 | 2599185147 | draft | img | 1122209 |
| 67770 | Marinospirillum alkaliphilum DSM 21637 | GCA_900119735 | scaffold | ncbi | 1122209 |
GC content
- @ref: 15852
- GC-content: 46.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.157 | no |
| flagellated | yes | 87.273 | no |
| gram-positive | no | 99.236 | no |
| anaerobic | no | 94.33 | no |
| aerobic | yes | 79.557 | no |
| halophile | yes | 72.311 | no |
| spore-forming | no | 94.75 | no |
| thermophile | no | 96.675 | no |
| glucose-util | no | 52.291 | no |
| glucose-ferment | no | 88.489 | no |
External links
@ref: 15852
culture collection no.: DSM 21637, CGMCC AS 1.2746, JCM 11312, CGMCC 1.2746
straininfo link
- @ref: 80511
- straininfo: 100741
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 15852 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21637) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21637 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 80511 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100741.1 | StrainInfo: A central database for resolving microbial strain identifiers |