Archive BacDiveID:10.13145/bacdive11275.20230509.8.1

Strain identifier

BacDive ID: 11275

Type strain:

Species: Marinomonas ostreistagni

Strain Designation: UST010306-043

Strain history: K. W. K. Lau UST010306-043.

NCBI tax ID(s): 359209 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 17202

BacDive-ID: 11275

DSM-Number: 23425

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Marinomonas ostreistagni UST010306-043 is a mesophilic bacterium that was isolated from pearl-oyster culture.

NCBI tax id

NCBI tax id: 359209
Matching level: species

strain history

@ref	history
17202	<- NRRL
67770	K. W. K. Lau UST010306-043.

doi: 10.13145/bacdive11275.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Marinomonas
species: Marinomonas ostreistagni
full scientific name: Marinomonas ostreistagni Lau et al. 2006

@ref: 17202

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas ostreistagni

full scientific name: Marinomonas ostreistagni Lau et al. 2006

strain designation: UST010306-043

type strain: yes

Culture and growth conditions

culture medium

@ref: 17202
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
17202	positive	growth	28	mesophilic
67770	positive	growth	30	mesophilic

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
17202	pearl-oyster culture	Hainan Province, pond in Sanya	China	CHN	Asia
67770	Pearl-oyster culture pond of HKUST-CAS Joint Laboratory	Sanya, Hainan Province	China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture
#Host	#Invertebrates (Other)	#Mollusca

Safety information

risk assessment

@ref: 17202
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 17202
description: Marinomonas ostreistagni gene for 16S rRNA, partial sequence
accession: AB242868
length: 1536
database: ena
NCBI tax ID: 359209

Genome sequences

@ref: 66792
description: Marinomonas ostreistagni UST010306-043
accession: GCA_016888445
assembly level: contig
database: ncbi
NCBI tax ID: 359209

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	yes	95.004	no
gram-positive	no	98.922	no
anaerobic	no	97.046	no
aerobic	yes	86.079	no
halophile	yes	84.964	no
spore-forming	no	95.176	no
thermophile	no	99.385	yes
glucose-util	yes	88.433	no
motile	yes	94.423	no
glucose-ferment	no	86.357	no

External links

@ref: 17202

culture collection no.: DSM 23425, JCM 13672, NRRL B-41433

straininfo link

@ref: 80508
straininfo: 296443

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	17012546	Marinomonas ostreistagni sp. nov., isolated from a pearl-oyster culture pond in Sanya, Hainan Province, China.	Lau KWK, Ren J, Wai NLM, Lau SCL, Qian PY, Wong PK, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.64392-0	2006	Animals, Aquaculture, Bacterial Typing Techniques, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Marinomonas/chemistry/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Pinctada/growth & development, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA	Genetics
Phylogeny	24105944	Marinomonas fungiae sp. nov., isolated from the coral Fungia echinata from the Andaman Sea.	Kumari P, Poddar A, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.054809-0	2013	Animals, Anthozoa/microbiology, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, India, Marinomonas/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ubiquinone/chemistry	Genetics
Phylogeny	34323676	Maribrevibacterium harenarium gen. nov., sp. nov., represented by a marine strain of the family Oceanospirillaceae.	Mo K, Wu Q, Hu Y, Huang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004872	2021	Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinomonas, *Oceanospirillaceae/genetics, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Transcriptome

Reference

@id	authors	catalogue	doi/url	title
17202	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23425)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-23425
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
80508	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID296443.1	StrainInfo: A central database for resolving microbial strain identifiers