Strain identifier

BacDive ID: 11274

Type strain: Yes

Species: Marinomonas pontica

Strain Designation: 46-16

Strain history: <- E. P. Ivanova, Swinburne Univ. of Techn., Hawthorn, Australia; 46-16 <- O. M. Onyshchenko, IMV

NCBI tax ID(s): 264739 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7188

BacDive-ID: 11274

DSM-Number: 17793

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Marinomonas pontica 46-16 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea-water.

NCBI tax id

  • NCBI tax id: 264739
  • Matching level: species

strain history

  • @ref: 7188
  • history: <- E. P. Ivanova, Swinburne Univ. of Techn., Hawthorn, Australia; 46-16 <- O. M. Onyshchenko, IMV

doi: 10.13145/bacdive11274.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Marinomonas
  • species: Marinomonas pontica
  • full scientific name: Marinomonas pontica Ivanova et al. 2005

@ref: 7188

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Marinomonas

species: Marinomonas pontica

full scientific name: Marinomonas pontica Ivanova et al. 2005

strain designation: 46-16

type strain: yes

Morphology

cell morphology

  • @ref: 31328
  • gram stain: negative
  • cell length: 1.2 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31328
  • production: no

Culture and growth conditions

culture medium

  • @ref: 7188
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7188positivegrowth28mesophilic
31328positivegrowth4.0-33
31328positiveoptimum22.5psychrophilic

culture pH

@refabilitytypepHPH range
31328positivegrowth6.0-10alkaliphile
31328positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31328
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31328
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31328NaClpositivegrowth0.5-10 %
31328NaClpositiveoptimum5.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3132830089acetate+carbon source
3132816449alanine+carbon source
3132829016arginine+carbon source
3132822653asparagine+carbon source
3132817057cellobiose+carbon source
3132816947citrate+carbon source
3132823652dextrin+carbon source
3132816236ethanol+carbon source
3132815740formate+carbon source
3132828757fructose+carbon source
3132817234glucose+carbon source
3132829987glutamate+carbon source
3132828087glycogen+carbon source
3132827570histidine+carbon source
3132824996lactate+carbon source
3132817716lactose+carbon source
3132825115malate+carbon source
3132817306maltose+carbon source
3132829864mannitol+carbon source
3132818257ornithine+carbon source
3132828044phenylalanine+carbon source
3132826271proline+carbon source
3132817272propionate+carbon source
3132815361pyruvate+carbon source
3132826546rhamnose+carbon source
3132833942ribose+carbon source
3132817822serine+carbon source
3132817992sucrose+carbon source
3132827082trehalose+carbon source

enzymes

@refvalueactivityec
31328catalase+1.11.1.6
31328cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7188
  • sample type: sea-water
  • geographic location: Karadag Natural Reserve of the Eastern Crimea, Black Sea
  • country: Ukraine
  • origin.country: UKR
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_27069.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_407;97_686;98_20280;99_27069&stattab=map
  • Last taxonomy: Marinomonas
  • 16S sequence: AY539835
  • Sequence Identity:
  • Total samples: 168
  • soil counts: 4
  • aquatic counts: 158
  • animal counts: 4
  • plant counts: 2

Safety information

risk assessment

  • @ref: 7188
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7188
  • description: Marinomonas pontica strain 46-16 16S ribosomal RNA gene, complete sequence
  • accession: AY539835
  • length: 1535
  • database: ena
  • NCBI tax ID: 264739

Genome sequences

  • @ref: 66792
  • description: Marinomonas pontica LMG 22531
  • accession: GCA_026191375
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 264739

GC content

  • @ref: 7188
  • GC-content: 46.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes94.055no
flagellatedyes92.512no
gram-positiveno98.488yes
anaerobicno96.282yes
aerobicyes88.801yes
halophileyes86.353yes
spore-formingno96.139yes
glucose-fermentno81.387no
thermophileno99.306no
glucose-utilyes90.898yes

External links

@ref: 7188

culture collection no.: DSM 17793, KMM 3492, LMG 22531, UCM 11075

straininfo link

  • @ref: 80507
  • straininfo: 132303

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653887Marinomonas pontica sp. nov., isolated from the Black Sea.Ivanova EP, Onyshchenko OM, Christen R, Lysenko AM, Zhukova NV, Shevchenko LS, Kiprianova EAInt J Syst Evol Microbiol10.1099/ijs.0.63326-02005Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Genes, rRNA, Molecular Sequence Data, Oceanospirillaceae/*classification/genetics/isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, UkraineGenetics
Phylogeny20935088Marinomonas alcarazii sp. nov., M. rhizomae sp. nov., M. foliarum sp. nov., M. posidonica sp. nov. and M. aquiplantarum sp. nov., isolated from the microbiota of the seagrass Posidonia oceanica.Lucas-Elio P, Marco-Noales E, Espinosa E, Ordax M, Lopez MM, Garcias-Bonet N, Marba N, Duarte CM, Sanchez-Amat AInt J Syst Evol Microbiol10.1099/ijs.0.027227-02010Alismatales/*microbiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Marinomonas/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny35550236Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea.Gao Y, Wei Y, Wang PInt J Syst Evol Microbiol10.1099/ijsem.0.0053682022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Marinomonas, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7188Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17793)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17793
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31328Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2764228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80507Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID132303.1StrainInfo: A central database for resolving microbial strain identifiers