Strain identifier

BacDive ID: 11269

Type strain: Yes

Species: Oceanospirillum vagum

Strain Designation: 40

Strain history: CIP <- 1988, NCIMB <- 1973, ATCC, Oceanospirillum vagum <- P. Baumann: strain 40, Alteromonas vaga

NCBI tax ID(s): 28255 (species)

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General

@ref: 2252

BacDive-ID: 11269

DSM-Number: 5605

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Oceanospirillum vagum 40 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 28255
  • Matching level: species

strain history

@refhistory
2252<- LMG <- ATCC (Alteromonas vaga) <- P. Baumann
67770IAM 12923 <-- ATCC 27119 <-- P. Baumann 40.
123774CIP <- 1988, NCIMB <- 1973, ATCC, Oceanospirillum vagum <- P. Baumann: strain 40, Alteromonas vaga

doi: 10.13145/bacdive11269.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Oceanospirillaceae
  • genus: Oceanospirillum
  • species: Oceanospirillum vagum
  • full scientific name: Oceanospirillum vagum (Baumann et al. 1972) Bowditch et al. 1984

  • synonyms

    @refsynonym
    20215Alteromonas vaga
    20215Marinomonas vaga

@ref: 2252

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Oceanospirillaceae

genus: Oceanospirillum

species: Oceanospirillum vagum

full scientific name: Oceanospirillum vagum (Baumann et al. 1972) Bowditch et al. 1984

strain designation: 40

type strain: yes

Morphology

cell morphology

  • @ref: 123774
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2252MARINOMONAS VAGA MEDIUM (DSMZ Medium 617)yeshttps://mediadive.dsmz.de/medium/617Name: MARINOMONAS VAGA MEDIUM (DSMZ Medium 617) Composition: NaCl 30.0 g/l Agar 15.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water
35508Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
123774CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
2252positivegrowth25mesophilic
35508positivegrowth25mesophilic
67770positivegrowth25mesophilic
123774positivegrowth15-25psychrophilic
123774nogrowth5psychrophilic
123774nogrowth30mesophilic
123774nogrowth37mesophilic
123774nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
123774NaClpositivegrowth2-10 %
123774NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1237744853esculin-hydrolysis
12377417234glucose+fermentation
12377417716lactose-fermentation
12377417632nitrate-reduction
12377416301nitrite-reduction
123774132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 123774
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 123774
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12377415688acetoin-
12377417234glucose-

enzymes

@refvalueactivityec
123774oxidase-
123774beta-galactosidase+3.2.1.23
123774alcohol dehydrogenase-1.1.1.1
123774gelatinase-
123774amylase-
123774DNase+
123774caseinase-3.4.21.50
123774catalase-1.11.1.6
123774tween esterase-
123774gamma-glutamyltransferase-2.3.2.2
123774lecithinase-
123774lipase-
123774lysine decarboxylase-4.1.1.18
123774ornithine decarboxylase-4.1.1.17
123774phenylalanine ammonia-lyase+4.3.1.24
123774tryptophan deaminase+
123774urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123774-+++-+---------+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123774--------------------------------------------------------------+-++-------------++-----+--++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
2252seawaterHawaii, coast of OahuUSAUSANorth America
123774Environment, Seawater enriched on glycerolOahu, HawaiiUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_174954.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_113;96_2465;97_3008;98_31855;99_174954&stattab=map
  • Last taxonomy: Marinomonas vaga
  • 16S sequence: X67025
  • Sequence Identity:
  • Total samples: 114
  • soil counts: 5
  • aquatic counts: 95
  • animal counts: 14

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
22521Risk group (German classification)
1237741Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Marinomonas vaga 16S rRNAD11182216ena28255
20218Marinomonas vaga 16S rRNAD11231214ena28255
20218Marinomonas vaga 16S rRNAD11280191ena28255
2252Marinomonas vaga gene for 16S rRNA, partial sequence, strain: NBRC 103030AB6819101464ena28255
2252M.vaga 16S rRNA sequenceX670251467ena28255

GC content

  • @ref: 67770
  • GC-content: 49.3
  • method: Buoyant density centrifugation (BD)

External links

@ref: 2252

culture collection no.: DSM 5605, ATCC 27119, CCUG 16047, CIP 74.02, LMG 2845, NCMB 1962, JCM 20774, CIP 103202, IAM 12923, NBRC 103030, NCIMB 1962

straininfo link

  • @ref: 80502
  • straininfo: 3555

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism15170376Structure of lipid A from the marine gamma-proteobacterium Marinomonas vaga ATCC 27119T lipopolysaccharide.Kapustina NV, Krasikova IN, Isakov VV, Gorshkova NM, Solov'eva TFBiochemistry (Mosc)10.1023/b:biry.0000026196.90337.012004Animals, Glucosamine/analysis, Hydrolysis, Lipid A/*chemistry, Lipopolysaccharides/metabolism, Oceanospirillaceae/*chemistry, Seawater
Phylogeny15233786Detailed structure of lipid A isolated from lipopolysaccharide from the marine proteobacterium Marinomonas vaga ATCC 27119.Krasikova IN, Kapustina NV, Isakov VV, Dmitrenok AS, Dmitrenok PS, Gorshkova NM, Solov'eva TFEur J Biochem10.1111/j.1432-1033.2004.04212.x2004Animals, Bacterial Proteins/*chemistry/toxicity, Gammaproteobacteria/*chemistry, Lipid A/*chemistry/toxicity, Lipopolysaccharides/*chemistry, Mass Spectrometry, Mice, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Seawater
Phylogeny19060051Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand.Chang HW, Roh SW, Kim KH, Nam YD, Yoon JH, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65724-02008Fatty Acids/analysis, Marine Biology, Marinomonas/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Silicon Dioxide, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2252Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5605)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5605
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35508Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14973
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80502Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3555.1StrainInfo: A central database for resolving microbial strain identifiers
123774Curators of the CIPCollection of Institut Pasteur (CIP 103202)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103202