Strain identifier

BacDive ID: 11267

Type strain: Yes

Species: Balneatrix alpica

Strain Designation: 4-87

Strain history: CIP <- 1992, P.A.D. Grimont, Inst. Pasteur, Paris, France <- 1987, Y. Peloux, Marseille Hosp., Marseille, France <- 1987, C. De Mahenge, Manosque Hosp., Manosque, France: strain 4-87

NCBI tax ID(s): 1121103 (strain), 75684 (species)

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General

@ref: 6528

BacDive-ID: 11267

DSM-Number: 16621

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Balneatrix alpica 4-87 is an aerobe, mesophilic, motile bacterium that was isolated from cerebrospinal fluid.

NCBI tax id

NCBI tax idMatching level
1121103strain
75684species

strain history

@refhistory
6528<- CIP <- P. A. D. Grimont <- Y. Peloux <- C. de Mahenge; 4-87
116263CIP <- 1992, P.A.D. Grimont, Inst. Pasteur, Paris, France <- 1987, Y. Peloux, Marseille Hosp., Marseille, France <- 1987, C. De Mahenge, Manosque Hosp., Manosque, France: strain 4-87

doi: 10.13145/bacdive11267.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Balneatricaceae
  • genus: Balneatrix
  • species: Balneatrix alpica
  • full scientific name: Balneatrix alpica Dauga et al. 1993

@ref: 6528

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Balneatrichaceae

genus: Balneatrix

species: Balneatrix alpica

full scientific name: Balneatrix alpica Dauga et al. 1993

strain designation: 4-87

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.842
6948099.997negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6528BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
6528REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
40083MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116263CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
6528positivegrowth30mesophilic
40083positivegrowth30mesophilic
51063positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 51063
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51063C16:016.916
    51063C10:0 3OH4.711.423
    51063C12:0 3OH2.413.455
    51063C16:1 ω7c52.615.819
    51063C18:1 ω7c /12t/9t23.517.824
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6528++------+-+++++--++-+
51063++------+-+++++--++-+
6528++------+-+++-+--++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
6528cerebrospinal fluidsouthern FranceFranceFRAEurope
51063Human cerebrospinal fluidGréoux-les-BainsFranceFRAEurope1987
116263Human, Cerebrospinal fluidGréoux les BainsFranceFRAEurope1987

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Cerebrospinal fluid
#Infection#Patient

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
65282Risk group (German classification)
1162631Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6528
  • description: Balneatrix alpica 16S rRNA gene
  • accession: Y17112
  • length: 1395
  • database: ena
  • NCBI tax ID: 75684

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Balneatrix alpica DSM 16621GCA_000619885scaffoldncbi1121103
66792Balneatrix alpica DSM 166211121103.3wgspatric1121103
66792Balneatrix alpica DSM 166212558860993draftimg1121103

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes94.767no
flagellatedyes93.679no
gram-positiveno99.056no
anaerobicno98.382no
halophileyes73.765no
spore-formingno96.842no
thermophileno99.092no
glucose-utilyes95.453yes
aerobicyes88.384yes
glucose-fermentno85.286yes

External links

@ref: 6528

culture collection no.: DSM 16621, ATCC 51285, CIP 103589, CCUG 32555

straininfo link

  • @ref: 80500
  • straininfo: 42901

literature

  • topic: Phylogeny
  • Pubmed-ID: 8327781
  • title: Balneatrix alpica gen. nov., sp. nov., a bacterium associated with pneumonia and meningitis in a spa therapy center.
  • authors: Dauga C, Gillis M, Vandamme P, Ageron E, Grimont F, Kersters K, de Mahenge C, Peloux Y, Grimont PA
  • journal: Res Microbiol
  • DOI: 10.1016/0923-2508(93)90213-l
  • year: 1993
  • mesh: Balneology, Gram-Negative Bacteria/genetics/*isolation & purification/ultrastructure, Humans, Hybridization, Genetic/genetics, In Vitro Techniques, Meningitis, Bacterial/*microbiology, Microscopy, Electron, Phenotype, Pneumonia/*microbiology, RNA, Ribosomal, 16S/genetics, *Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
6528Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16621)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16621
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
40083Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15403
51063Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32555)https://www.ccug.se/strain?id=32555
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80500Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42901.1StrainInfo: A central database for resolving microbial strain identifiers
116263Curators of the CIPCollection of Institut Pasteur (CIP 103589)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103589