Strain identifier

BacDive ID: 11252

Type strain: Yes

Species: Streptomonospora flavalba

Strain history: CCTCC AA 208047 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 91394.

NCBI tax ID(s): 505256 (species)

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General

@ref: 15449

BacDive-ID: 11252

DSM-Number: 45155

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomonospora flavalba DSM 45155 is an aerobe, spore-forming, mesophilic bacterium that was isolated from saline soil from a salt lake.

NCBI tax id

  • NCBI tax id: 505256
  • Matching level: species

strain history

@refhistory
15449<- S.-K. Tang and W.-J. Li, YIM; YIM 91394 <- M. Cai
67770CCTCC AA 208047 <-- S.-K. Tang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 91394.

doi: 10.13145/bacdive11252.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Streptomonospora
  • species: Streptomonospora flavalba
  • full scientific name: Streptomonospora flavalba Cai et al. 2009

@ref: 15449

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Streptomonospora

species: Streptomonospora flavalba

full scientific name: Streptomonospora flavalba Cai et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 29162
  • gram stain: positive
  • cell length: 0.8 µm
  • cell width: 0.55 µm
  • motility: no

colony morphology

@refcolony colorincubation periodmedium used
20171Brown beige (1011)10-14 daysISP 3
20171Ivory (1014)10-14 daysISP 4
20171Oxide red (3009)10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium name
20171noISP 3
20171noISP 4
20171noISP 7

pigmentation

  • @ref: 29162
  • production: no

multimedia

  • @ref: 15449
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45155.jpg
  • caption: Medium 1504 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15449BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
20171ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20171ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20171ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
15449M1-NOCARDIOPSIS ARABIA MEDIUM (DSMZ Medium 1065)yeshttps://mediadive.dsmz.de/medium/1065Name: M1-NOCARDIOPSIS ARABIA MEDIUM (DSMZ Medium 1065) Composition: NaCl 20.0 g/l Agar 18.0 g/l Starch 10.0 g/l Yeast extract 4.0 g/l Peptone 2.0 g/l Sea water
15449STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240)yeshttps://mediadive.dsmz.de/medium/1240Name: STARCH-MINERAL SALT-AGAR + 10% NACL (DSMZ Medium 1240) Composition: NaCl 100.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15449positivegrowth37mesophilic
20171positiveoptimum37mesophilic
29162positivegrowth20-45
29162positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
29162positivegrowth5.0-9.0alkaliphile
29162positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29162
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29162
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
29162NaClpositivegrowth05-25 %
29162NaClpositiveoptimum10 %

observation

  • @ref: 67770
  • observation: quinones: MK-10(H8), MK-9(H8), MK-10(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2017117234glucose+
2017122599arabinose-
2017117992sucrose-
2017118222xylose+/-
2017117268myo-inositol-
2017129864mannitol-
2017128757fructose-
2017126546rhamnose-
2017116634raffinose-
2017162968cellulose-
2916216449alanine+carbon source
2916222599arabinose+carbon source
2916229016arginine+carbon source
2916217234glucose+carbon source
2916215428glycine+carbon source
2916227570histidine+carbon source
2916217306maltose+carbon source
2916228044phenylalanine+carbon source
2916226271proline+carbon source
2916226546rhamnose+carbon source
2916217822serine+carbon source
2916226986threonine+carbon source
2916216296D-tryptophan+carbon source

enzymes

@refvalueactivityec
29162catalase+1.11.1.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
20171+---------+----+-+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15449saline soil from a salt lakeXinjiang ProvinceChinaCHNAsia
67770Saline soil from a salt lake in Xinjiang ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_839.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_505;97_580;98_667;99_839&stattab=map
  • Last taxonomy: Streptomonospora
  • 16S sequence: EU442553
  • Sequence Identity:
  • Total samples: 7
  • soil counts: 5
  • aquatic counts: 1
  • animal counts: 1

Safety information

risk assessment

  • @ref: 15449
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15449
  • description: Streptomonospora flavalba strain YIM 91394 16S ribosomal RNA gene, partial sequence
  • accession: EU442553
  • length: 1560
  • database: ena
  • NCBI tax ID: 505256

GC content

@refGC-contentmethod
1544972.5high performance liquid chromatography (HPLC)
2916272.5

External links

@ref: 15449

culture collection no.: DSM 45155, CCTCC AA 208047, YIM 91394, JCM 31753

straininfo link

  • @ref: 80486
  • straininfo: 407967

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19622663Streptomonospora amylolytica sp. nov. and Streptomonospora flavalba sp. nov., two novel halophilic actinomycetes isolated from a salt lake.Cai M, Tang SK, Chen YG, Li Y, Zhang YQ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.007682-02009Actinomycetales/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism, *Water MicrobiologyMetabolism
Phylogeny24858572Streptomonospora algeriensis sp. nov., a halophilic actinomycete isolated from soil in Algeria.Meklat A, Bouras N, Riba A, Zitouni A, Mathieu F, Rohde M, Schumann P, Sproer C, Klenk HP, Sabaou NAntonie Van Leeuwenhoek10.1007/s10482-014-0195-32014Actinobacteria/*classification/genetics/*isolation & purification/physiology, Algeria, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15449Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45155)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45155
20171Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM45155.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29162Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2558628776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80486Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407967.1StrainInfo: A central database for resolving microbial strain identifiers