Strain identifier
BacDive ID: 11233
Type strain:
Species: Nocardiopsis ganjiahuensis
Strain history: <- Z. Liping; HBUM 20031 <- C.-L. Jiang
NCBI tax ID(s): 239984 (species)
version 8.1 (current version)
General
@ref: 12254
BacDive-ID: 11233
DSM-Number: 45025
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardiopsis ganjiahuensis DSM 45025 is a mesophilic bacterium that was isolated from soil of saline.
NCBI tax id
- NCBI tax id: 239984
- Matching level: species
strain history
- @ref: 12254
- history: <- Z. Liping; HBUM 20031 <- C.-L. Jiang
doi: 10.13145/bacdive11233.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Nocardiopsidaceae
- genus: Nocardiopsis
- species: Nocardiopsis ganjiahuensis
- full scientific name: Nocardiopsis ganjiahuensis Zhang et al. 2008
@ref: 12254
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiopsaceae
genus: Nocardiopsis
species: Nocardiopsis ganjiahuensis
full scientific name: Nocardiopsis ganjiahuensis Zhang et al. 2008
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
12254 | GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) | yes | https://mediadive.dsmz.de/medium/852 | Name: GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) Composition: Glucose 20.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na-acetate 10.0 g/l Agar 10.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x 4 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l NaCl 0.01 g/l Distilled water |
12254 | BOGORIELLA MEDIUM (DSMZ Medium 785) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium785.pdf |
culture temp
- @ref: 12254
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 12254
- sample type: soil of saline
- geographic location: Ganjia Lake of Xinjiang Province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_6587.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_659;97_762;98_1213;99_6587&stattab=map
- Last taxonomy: Nocardiopsis
- 16S sequence: AY336506
- Sequence Identity:
- Total samples: 43
- soil counts: 7
- aquatic counts: 2
- animal counts: 34
Safety information
risk assessment
- @ref: 12254
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 12254
- description: Nocardiopsis sp. 20031 16S ribosomal RNA gene, partial sequence
- accession: AY336506
- length: 1439
- database: ena
- NCBI tax ID: 239977
GC content
- @ref: 12254
- GC-content: 71.46
External links
@ref: 12254
culture collection no.: DSM 45025, HBUM 20031
straininfo link
- @ref: 80468
- straininfo: 297494
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
12254 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45025) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45025 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
80468 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297494.1 | StrainInfo: A central database for resolving microbial strain identifiers |