Strain identifier

BacDive ID: 11233

Type strain: No

Species: Nocardiopsis ganjiahuensis

Strain history: <- Z. Liping; HBUM 20031 <- C.-L. Jiang

NCBI tax ID(s): 239984 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 12254

BacDive-ID: 11233

DSM-Number: 45025

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardiopsis ganjiahuensis DSM 45025 is a mesophilic bacterium that was isolated from soil of saline.

NCBI tax id

  • NCBI tax id: 239984
  • Matching level: species

strain history

  • @ref: 12254
  • history: <- Z. Liping; HBUM 20031 <- C.-L. Jiang

doi: 10.13145/bacdive11233.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Nocardiopsis
  • species: Nocardiopsis ganjiahuensis
  • full scientific name: Nocardiopsis ganjiahuensis Zhang et al. 2008

@ref: 12254

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis ganjiahuensis

full scientific name: Nocardiopsis ganjiahuensis Zhang et al. 2008

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12254GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852)yeshttps://mediadive.dsmz.de/medium/852Name: GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) Composition: Glucose 20.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na-acetate 10.0 g/l Agar 10.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x 4 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l NaCl 0.01 g/l Distilled water
12254BOGORIELLA MEDIUM (DSMZ Medium 785)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium785.pdf

culture temp

  • @ref: 12254
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 12254
  • sample type: soil of saline
  • geographic location: Ganjia Lake of Xinjiang Province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_6587.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_659;97_762;98_1213;99_6587&stattab=map
  • Last taxonomy: Nocardiopsis
  • 16S sequence: AY336506
  • Sequence Identity:
  • Total samples: 43
  • soil counts: 7
  • aquatic counts: 2
  • animal counts: 34

Safety information

risk assessment

  • @ref: 12254
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12254
  • description: Nocardiopsis sp. 20031 16S ribosomal RNA gene, partial sequence
  • accession: AY336506
  • length: 1439
  • database: ena
  • NCBI tax ID: 239977

GC content

  • @ref: 12254
  • GC-content: 71.46

External links

@ref: 12254

culture collection no.: DSM 45025, HBUM 20031

straininfo link

  • @ref: 80468
  • straininfo: 297494

Reference

@idauthorscataloguedoi/urltitle
12254Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45025)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45025
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80468Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297494.1StrainInfo: A central database for resolving microbial strain identifiers