Strain identifier
BacDive ID: 11203
Type strain: 
Species: Nocardiopsis umidischolae
Strain Designation: 66/93, ID 4036
Strain history: DSM 44362 <-- M. A. Andersson 66/93.
NCBI tax ID(s): 163605 (species)
version 8.1 (current version)
General
@ref: 11705
BacDive-ID: 11203
DSM-Number: 44362
keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production
description: Nocardiopsis umidischolae 66/93 is a mesophilic bacterium that produces antibiotic compounds and was isolated from indoor dust from a water-damaged school.
NCBI tax id
- NCBI tax id: 163605
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11705 | <- M. Andersson, Univ. Helsinki, Finland; 66/93 |
| 67770 | DSM 44362 <-- M. A. Andersson 66/93. |
doi: 10.13145/bacdive11203.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Nocardiopsidaceae
- genus: Nocardiopsis
- species: Nocardiopsis umidischolae
- full scientific name: Nocardiopsis umidischolae Peltola et al. 2002
@ref: 11705
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiopsaceae
genus: Nocardiopsis
species: Nocardiopsis umidischolae
full scientific name: Nocardiopsis umidischolae Peltola et al. 2002
strain designation: 66/93, ID 4036
type strain: yes
Culture and growth conditions
culture medium
- @ref: 11705
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11705 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
compound production
- @ref: 11705
- compound: valinomycin
observation
- @ref: 67770
- observation: quinones: MK-10(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11705 | indoor dust from a water-damaged school | Espoo | Finland | FIN | Europe |
| 67770 | Indoor dust of a water-damaged school |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | |
| #Engineered | #Built environment | #Indoor |
| #Engineered | #Waste | #Dust (Ash) |
taxonmaps
- @ref: 69479
- File name: preview.99_17053.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_659;97_762;98_12916;99_17053&stattab=map
- Last taxonomy: Nocardiopsis
- 16S sequence: AB368715
- Sequence Identity:
- Total samples: 22
- soil counts: 9
- aquatic counts: 3
- animal counts: 7
- plant counts: 3
Safety information
risk assessment
- @ref: 11705
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 11705 | Nocardiopsis umidischolae 16S ribosomal RNA gene, partial sequence | AY036001 | 1453 | ena | 163605 |
| 67770 | Nocardiopsis umidischolae gene for 16S rRNA, partial sequence | AB368715 | 1457 | ena | 163605 |
External links
@ref: 11705
culture collection no.: DSM 44362, JCM 11758, NRRL B-24122, NBRC 100349, VTT E-032351
straininfo link
- @ref: 80449
- straininfo: 50591
literature
- topic: Phylogeny
- Pubmed-ID: 11526036
- title: Isolation of toxigenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis Species, N. exhalans sp. nov. and N. umidischolae sp. nov.
- authors: Peltola JS, Andersson MA, Kampfer P, Auling G, Kroppenstedt RM, Busse HJ, Salkinoja-Salonen MS, Rainey FA
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.67.9.4293-4304.2001
- year: 2001
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Air Microbiology, *Air Pollution, Indoor, Animals, Bacterial Toxins/*metabolism/toxicity, Construction Materials, Dust, *Environmental Monitoring, Fatty Acids/analysis, Genes, rRNA, Male, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Sperm Motility/drug effects, Spermatozoa/drug effects, Swine
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11705 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44362) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44362 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80449 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50591.1 | StrainInfo: A central database for resolving microbial strain identifiers |