Strain identifier
BacDive ID: 1119
Type strain:
Species: Halalkalibacterium halodurans
Strain Designation: C-125
Strain history: K. Horikoshi C-125.
NCBI tax ID(s): 86665 (species)
General
@ref: 7421
BacDive-ID: 1119
DSM-Number: 18197
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Halalkalibacterium halodurans C-125 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 86665
- Matching level: species
strain history
@ref | history |
---|---|
7421 | <- JCM <- K. Horikoshi |
67770 | K. Horikoshi C-125. |
doi: 10.13145/bacdive1119.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Halalkalibacterium
- species: Halalkalibacterium halodurans
- full scientific name: Halalkalibacterium halodurans (Nielsen et al. 1995 ex Boyer et al. 1973) Joshi et al. 2022
synonyms
@ref synonym 20215 Bacillus alcalophilus subsp. halodurans 20215 Bacillus okuhidensis 20215 Bacillus halodurans 20215 Alkalihalobacillus halodurans 20215 Alkalihalobacillus okuhidensis
@ref: 7421
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Halalkalibacterium
species: Halalkalibacterium halodurans
full scientific name: Halalkalibacterium halodurans (Nielsen et al. 1995) Joshi et al. 2022
strain designation: C-125
type strain: no
Culture and growth conditions
culture medium
- @ref: 7421
- name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
- growth: yes
- link: https://mediadive.dsmz.de/medium/31
- composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7421 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
enzymes
- @ref: 67770
- value: beta-galactosidase
- ec: 3.2.1.23
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
7421 | soil | Japan | JPN | Asia |
67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_4299.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2160;97_2613;98_3236;99_4299&stattab=map
- Last taxonomy: Alkalihalobacillus halodurans
- 16S sequence: AB598741
- Sequence Identity:
- Total samples: 6986
- soil counts: 1545
- aquatic counts: 1519
- animal counts: 3493
- plant counts: 429
Safety information
risk assessment
- @ref: 7421
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Bacillus halodurans gene for 16S rRNA, partial sequence, strain: JCM 9153
- accession: AB598741
- length: 1413
- database: ena
- NCBI tax ID: 86665
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Halalkalibacterium halodurans C-125 | GCA_000011145 | complete | ncbi | 272558 |
66792 | Alkalihalobacillus halodurans C-125 | 637000020 | complete | img | 272558 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 90.753 | no |
flagellated | yes | 84.567 | no |
gram-positive | yes | 86.662 | no |
anaerobic | no | 98.401 | no |
halophile | yes | 71.387 | no |
spore-forming | yes | 95.763 | no |
thermophile | no | 89.057 | yes |
glucose-util | yes | 91.589 | no |
aerobic | yes | 87.261 | no |
glucose-ferment | no | 92.18 | no |
External links
@ref: 7421
culture collection no.: DSM 18197, ATCC BAA 125, JCM 9153, CGMCC 1.6354, FERM 7344
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 10427704 | Replication origin region of the chromosome of alkaliphilic Bacillus halodurans C-125. | Takami H, Masui N, Nakasone K, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.63.1134 | 1999 | Alkalies, Bacillus/*genetics/metabolism, Chromosomes, Bacterial/*genetics, DNA Gyrase, DNA Topoisomerases, Type II/biosynthesis/genetics, DNA, Bacterial/biosynthesis/*genetics, Molecular Sequence Data, Open Reading Frames/genetics, Replication Origin/*genetics, Reverse Transcriptase Polymerase Chain Reaction | Metabolism |
Enzymology | 10484179 | Genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125. | Takami H, Takaki Y, Nakasone K, Sakiyama T, Maeno G, Sasaki R, Hirama C, Fuji F, Masui N | Extremophiles | 10.1007/s007920050120 | 1999 | Bacillus/*genetics, Base Sequence, *Chromosomes, Bacterial, Cloning, Molecular, DNA, Bacterial, Physical Chromosome Mapping | |
Genetics | 10803979 | An automated system for genome analysis to support microbial whole-genome shotgun sequencing. | Sakiyama T, Takami H, Ogasawara N, Kuhara S, Kozuki T, Doga K, Ohyama A, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.64.670 | 2000 | Automation, Bacillus/*genetics, Electronic Data Processing/methods, *Genome, Bacterial, Humans, Sequence Analysis, DNA/*methods, *Software | Pathogenicity |
Metabolism | 10805564 | Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view. | Takami H, Horikoshi K | Extremophiles | 10.1007/s007920050143 | 2000 | Alkalies/*metabolism, Bacillus/classification/enzymology/*genetics, Bacillus subtilis/genetics, Chromosome Mapping, Enzymes/metabolism, Gene Library, *Genome, Bacterial, *Industrial Microbiology, Physical Chromosome Mapping, Sequence Analysis, DNA | Enzymology |
Enzymology | 10972189 | Characterization and comparative study of the rrn operons of alkaliphilic Bacillus halodurans C-125. | Nakasone K, Masui N, Takaki Y, Sasaki R, Maeno G, Sakiyama T, Hirama C, Fuji F, Takami H | Extremophiles | 10.1007/pl00010713 | 2000 | Alkalies, Bacillus/*genetics, Bacillus subtilis/genetics, Chromosome Mapping, Cloning, Molecular, DNA, Bacterial/*genetics, Electrophoresis, Gel, Pulsed-Field, Endodeoxyribonucleases/metabolism, Gene Library, Hydrogen-Ion Concentration, Open Reading Frames/genetics, Promoter Regions, Genetic/genetics, RNA, Bacterial/analysis/genetics, RNA, Messenger/analysis/genetics, rRNA Operon/*genetics | Genetics |
Metabolism | 11057908 | The Na+/H+ antiporter of alkaliphilic Bacillus sp. | Kitada M, Kosono S, Kudo T | Extremophiles | 10.1007/s007920070010 | 2000 | Alkalies/pharmacology, Bacillus/chemistry/*genetics/growth & development/metabolism, Bacillus subtilis/chemistry/genetics, Cloning, Molecular, Hydrogen-Ion Concentration, Molecular Sequence Data, Mutation, Open Reading Frames, Restriction Mapping, Sodium-Hydrogen Exchangers/*genetics/metabolism | Enzymology |
Genetics | 11058132 | Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. | Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, Fuji F, Hirama C, Nakamura Y, Ogasawara N, Kuhara S, Horikoshi K | Nucleic Acids Res | 10.1093/nar/28.21.4317 | 2000 | ATP-Binding Cassette Transporters/genetics, Adaptation, Physiological/genetics, Alkalies/metabolism, Bacillus/chemistry/classification/*genetics/metabolism, Bacillus subtilis/chemistry/*genetics, Bacterial Proteins/genetics/physiology, Base Composition, Biological Transport, Cell Wall/genetics/metabolism, Conserved Sequence/genetics, DNA Transposable Elements/genetics, Databases as Topic, Energy Metabolism, Evolution, Molecular, Gene Transfer, Horizontal/genetics, Genes, Bacterial/genetics/physiology, *Genome, Bacterial, Molecular Sequence Data, Open Reading Frames/genetics, Physical Chromosome Mapping, Protein Biosynthesis, RNA, Transfer/genetics, Replication Origin/genetics, Sequence Homology, Sigma Factor/genetics, Spores, Bacterial/genetics, Transcription, Genetic/genetics, Transposases/genetics | Metabolism |
Metabolism | 11248197 | The Na(+)-dependence of alkaliphily in Bacillus. | Krulwich TA, Ito M, Guffanti AA | Biochim Biophys Acta | 10.1016/s0005-2728(00)00285-1 | 2001 | Bacillus/genetics/*metabolism, Cations, Monovalent, Cell Wall/metabolism, Cytoplasm/metabolism, Homeostasis, Hydrogen-Ion Concentration, Ion Transport, Membrane Lipids/metabolism, Models, Chemical, Sodium/*metabolism | Lipids |
Genetics | 11418576 | Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125. | Takami H, Han CG, Takaki Y, Ohtsubo E | J Bacteriol | 10.1128/JB.183.14.4345-4356.2001 | 2001 | Bacillus/*genetics/growth & development, Base Sequence, *DNA Transposable Elements, *DNA, Bacterial, *Genome, Bacterial, Introns, Molecular Sequence Data, Phylogeny, Transposases | Phylogeny |
Metabolism | 11699649 | A globin-coupled oxygen sensor from the facultatively alkaliphilic Bacillus halodurans C-125. | Hou S, Belisle C, Lam S, Piatibratov M, Sivozhelezov V, Takami H, Alam M | Extremophiles | 10.1007/s007920100220 | 2001 | Amino Acid Sequence, Bacillus/genetics/*metabolism, Bacterial Proteins/chemistry/genetics/*metabolism, Carrier Proteins/chemistry/genetics/metabolism, Cloning, Molecular, Globins/chemistry/genetics/*metabolism, Heme-Binding Proteins, Hemeproteins/chemistry/genetics/metabolism, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Oxygen/*metabolism, Protein Structure, Tertiary, Sequence Homology, Amino Acid | Enzymology |
Enzymology | 14702308 | The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase. | Zhuang Z, Song F, Takami H, Dunaway-Mariano D | J Bacteriol | 10.1128/JB.186.2.393-399.2004 | 2004 | Amino Acid Sequence, Bacillus/*enzymology, Catalysis, Gentisates/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Recombinant Proteins/isolation & purification, Thiolester Hydrolases/genetics/*metabolism | Metabolism |
Enzymology | 15170110 | Characterization of endo-beta-N-acetylglucosaminidase from alkaliphilic Bacillus halodurans C-125. | Fujita K, Takami H, Yamamoto K, Takegawa K | Biosci Biotechnol Biochem | 10.1271/bbb.68.1059 | 2004 | Amino Acid Sequence, Bacillus/*enzymology/genetics, Catalytic Domain/genetics, Escherichia coli/enzymology/metabolism, Glycosylation, Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase/*genetics/isolation & purification/*metabolism, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, Substrate Specificity | Metabolism |
Enzymology | 15293032 | A cloned Bacillus halodurans multicopper oxidase exhibiting alkaline laccase activity. | Ruijssenaars HJ, Hartmans S | Appl Microbiol Biotechnol | 10.1007/s00253-004-1571-0 | 2004 | Bacillus/*enzymology/genetics, Cloning, Molecular, Industrial Microbiology, Laccase/chemistry/*metabolism, Oxidoreductases/*metabolism, Recombinant Proteins/metabolism | Metabolism |
Stress | 15368891 | Wide-range distribution of insertion sequences identified in B. halodurans among bacilli and a new transposon disseminated in alkaliphilic and thermophilic bacilli. | Takami H, Matsuki A, Takaki Y | DNA Res | 10.1093/dnares/11.3.153 | 2004 | Bacillus/*genetics, *DNA Transposable Elements, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Sequence Analysis, DNA | Genetics |
Enzymology | 15491996 | A family 8 glycoside hydrolase from Bacillus halodurans C-125 (BH2105) is a reducing end xylose-releasing exo-oligoxylanase. | Honda Y, Kitaoka M | J Biol Chem | 10.1074/jbc.M409832200 | 2004 | Bacillus/*enzymology, Carbohydrate Sequence, Chromatography, Thin Layer, DNA/metabolism, DNA Mutational Analysis, Endo-1,4-beta Xylanases/chemistry/*physiology, Escherichia coli/metabolism, Glycoside Hydrolases/*chemistry/*physiology, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Models, Biological, Models, Chemical, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Polymers/chemistry, Protein Sorting Signals, Recombinant Proteins/chemistry, Temperature, Trisaccharides/chemistry, Xylans/chemistry, Xylose/chemistry, Xylosidases/chemistry | Metabolism |
Enzymology | 15718242 | Structural basis for the specificity of the reducing end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125. | Fushinobu S, Hidaka M, Honda Y, Wakagi T, Shoun H, Kitaoka M | J Biol Chem | 10.1074/jbc.M413693200 | 2005 | Bacillus/enzymology, Binding Sites, Catalysis, Crystallography, X-Ray, Disaccharides/chemistry, Electrons, Glycoside Hydrolases/chemistry, Hydrogen Bonding, Hydrolysis, Kinetics, Ligands, Models, Chemical, Models, Molecular, Mutagenesis, Site-Directed, Oligosaccharides/chemistry, Protein Binding, Protein Conformation, Protein Structure, Secondary, Substrate Specificity, Time Factors, Xylose/*chemistry, Xylosidases/*chemistry | |
Enzymology | 15914908 | The role of conserved arginine residue in loop 4 of glycoside hydrolase family 10 xylanases. | Nishimoto M, Kitaoka M, Fushinobu S, Hayashi K | Biosci Biotechnol Biochem | 10.1271/bbb.69.904 | 2005 | Amino Acid Sequence, Arginine/*chemistry, Bacillus/enzymology, Base Sequence, Clostridium/enzymology, *Conserved Sequence, Endo-1,4-beta Xylanases/*chemistry/metabolism, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Mutation, Protein Binding, Protein Conformation, Protein Structure, Secondary, Sequence Alignment | Genetics |
Genetics | 15936898 | A novel beta-glucanase gene from Bacillus halodurans C-125. | Akita M, Kayatama K, Hatada Y, Ito S, Horikoshi K | FEMS Microbiol Lett | 10.1016/j.femsle.2005.05.009 | 2005 | Amino Acid Sequence, Bacillus/enzymology/*genetics, DNA, Bacterial/analysis, DNA, Recombinant/genetics, Escherichia coli, *Genes, Bacterial, Genome, Bacterial, Glucan Endo-1,3-beta-D-Glucosidase/*genetics, Molecular Sequence Data | Enzymology |
Enzymology | 16003954 | An alkali-inducible flotillin-like protein from Bacillus halodurans C-125. | Zhang HM, Li Z, Tsudome M, Ito S, Takami H, Horikoshi K | Protein J | 10.1007/s10930-004-1519-3 | 2005 | Alkalies/*pharmacology, Amino Acid Sequence, Bacillus/*chemistry, Base Sequence, Blotting, Northern, Blotting, Western, Cloning, Molecular, DNA Primers, Electrophoresis, Polyacrylamide Gel, Mass Spectrometry, Membrane Proteins/chemistry/genetics/*isolation & purification, Molecular Sequence Data, Sequence Homology, Amino Acid | Genetics |
Metabolism | 16230347 | A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition. | Boraston AB, Healey M, Klassen J, Ficko-Blean E, Lammerts van Bueren A, Law V | J Biol Chem | 10.1074/jbc.M509958200 | 2005 | Amino Acid Sequence, Bacillus/*enzymology/*genetics, Bacterial Proteins/chemistry/genetics/metabolism, Conserved Sequence, Crystallography, X-Ray, Dimerization, Glucans/*metabolism, Molecular Sequence Data, Oligosaccharides/metabolism, Protein Structure, Secondary, Protein Structure, Tertiary, Starch/*metabolism, Structure-Activity Relationship, alpha-Amylases/chemistry/*genetics/*metabolism | Genetics |
16233226 | A kinetic study on pH-activity relationship of XynA from alkaliphilic Bacillus halodurans C-125 using aryl-xylobiosides. | Nishimoto M, Honda Y, Kitaoka M, Hayashi K | J Biosci Bioeng | 10.1016/s1389-1723(02)80079-2 | 2002 | |||
Enzymology | 16233324 | Employing chimeric xylanases to identify regions of an alkaline xylanase participating in enzyme activity at basic pH. | Nishimoto M, Kitaoka M, Hayashi K | J Biosci Bioeng | S1389-1723(02)80215-8 | 2002 | ||
Enzymology | 16511021 | Crystallization and preliminary X-ray analysis of reducing-end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125. | Honda Y, Fushinobu S, Hidaka M, Wakagi T, Shoun H, Kitaoka M | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/S1744309105003635 | 2005 | Bacillus/*enzymology, Bacterial Proteins/chemistry/isolation & purification, Crystallization, Endo-1,4-beta Xylanases/*chemistry/isolation & purification, Oxidation-Reduction, X-Ray Diffraction, Xylose/*metabolism, Xylosidases/*chemistry/isolation & purification | Phylogeny |
Enzymology | 16774742 | A primary sodium pump gene of the moderate halophile Halobacillus dabanensis exhibits secondary antiporter properties. | Yang L, Jiang J, Zhang B, Zhao B, Wang L, Yang SS | Biochem Biophys Res Commun | 10.1016/j.bbrc.2006.05.181 | 2006 | Amino Acid Sequence, Antiporters/genetics/*physiology, Bacillaceae/*enzymology, Bacillus/enzymology/genetics, Base Sequence, Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology, Cell Membrane/enzymology, Cloning, Molecular, DNA, Bacterial/genetics, Escherichia coli/drug effects/enzymology/genetics, Genes, Bacterial/genetics/*physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Multienzyme Complexes/physiology, NADH Dehydrogenase/physiology, NADH, NADPH Oxidoreductases/physiology, Sodium-Potassium-Exchanging ATPase/genetics/*physiology, Uncoupling Agents/pharmacology | Genetics |
Phylogeny | 16896606 | Expression in Escherichia coli and characterization of beta-xylosidases GH39 and GH-43 from Bacillus halodurans C-125. | Smaali I, Remond C, O'Donohue MJ | Appl Microbiol Biotechnol | 10.1007/s00253-006-0512-5 | 2006 | Bacillus/classification/*enzymology/genetics, Dietary Fiber/metabolism, Escherichia coli/*genetics, Hydrogen-Ion Concentration, Phylogeny, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Substrate Specificity, Temperature, Xylosidases/chemistry/genetics/*isolation & purification/metabolism | Enzymology |
Enzymology | 17021659 | Cloning and characterization of dihydrofolate reductase from a facultative alkaliphilic and halotolerant bacillus strain. | Redecke L, Brehm MA, Bredehorst R | Extremophiles | 10.1007/s00792-006-0013-6 | 2006 | *Adaptation, Physiological, Amino Acid Sequence, Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/genetics/*metabolism, *Cloning, Molecular, Conserved Sequence, Enzyme Stability, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Potassium Chloride/metabolism, Protein Structure, Secondary, Recombinant Proteins/metabolism, Sequence Alignment, Sequence Analysis, Protein, Sodium Chloride/metabolism, Temperature, Tetrahydrofolate Dehydrogenase/chemistry/genetics/*metabolism, Urea/metabolism | Metabolism |
Metabolism | 17085596 | Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic. | McClerren AL, Cooper LE, Quan C, Thomas PM, Kelleher NL, van der Donk WA | Proc Natl Acad Sci U S A | 10.1073/pnas.0606088103 | 2006 | Acetoacetates/metabolism, Amino Acid Sequence, Bacillus/chemistry/genetics/metabolism, Bacterial Proteins/*biosynthesis/*chemistry, Bacteriocins/*biosynthesis/*chemistry, Factor Xa/metabolism, Iodoacetamide/chemistry/metabolism, Molecular Sequence Data, Protein Engineering, Sequence Alignment, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Genetics |
Genetics | 17233677 | Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125. | Lawton EM, Cotter PD, Hill C, Ross RP | FEMS Microbiol Lett | 10.1111/j.1574-6968.2006.00539.x | 2007 | Amino Acid Sequence, Anti-Bacterial Agents/*biosynthesis/chemistry/*isolation & purification, Antibiosis, Bacillus/genetics/*metabolism, Bacteriocins/*biosynthesis/chemistry/genetics/*isolation & purification, Computational Biology, Gene Order, Genes, Bacterial, Genome, Bacterial, Gram-Positive Bacteria/drug effects/growth & development, Mass Spectrometry, Microbial Sensitivity Tests, Molecular Sequence Data, Multigene Family, Mutagenesis, Site-Directed, Peptides/isolation & purification/pharmacology | Enzymology |
Phylogeny | 17302160 | Isolation and identification of two xylanase-producing extremely alkali-tolerant strains of Bacillus halodurans from Turpan in China. | Yi X, Xie ZJ, Deng AH, Wang N, Erkin R | Wei Sheng Wu Xue Bao | 2006 | Bacillus/classification/enzymology/*isolation & purification/physiology, Endo-1,4-beta Xylanases/*biosynthesis, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics | Enzymology | |
Enzymology | 17341817 | High-level heterologous expression of Bacillus halodurans putative xylanase xyn11a (BH0899) in Kluyveromyces lactis. | Wamalwa BM, Zhao G, Sakka M, Shiundu PM, Kimura T, Sakka K | Biosci Biotechnol Biochem | 10.1271/bbb.60477 | 2007 | Bacillus/*enzymology, Bacterial Proteins/*biosynthesis/genetics, Kluyveromyces/*enzymology, Plasmids, Promoter Regions, Genetic, Recombinant Proteins/biosynthesis/genetics, Xylosidases/*biosynthesis/genetics | |
Enzymology | 17383976 | Molecular anatomy of the alkaliphilic xylanase from Bacillus halodurans C-125. | Nishimoto M, Fushinobu S, Miyanaga A, Kitaoka M, Hayashi K | J Biochem | 10.1093/jb/mvm072 | 2007 | Amino Acid Sequence, Amino Acid Substitution, Asparagine/chemistry, Bacillus/enzymology, Clostridium/enzymology, Crystallography, X-Ray, Endo-1,4-beta Xylanases/*chemistry/genetics/metabolism, Hydrogen Bonding, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Protein Structure, Secondary, Sequence Alignment, Serine/chemistry | Genetics |
Enzymology | 18051350 | Cloning, characterization, and expression of xylanase A gene from Paenibacillus sp. DG-22 in Escherichia coli. | Lee TH, Lim PO, Lee YE | J Microbiol Biotechnol | 2007 | Amino Acid Sequence, Bacteria/*enzymology/*genetics, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA Primers/genetics, DNA, Bacterial/genetics, Endo-1,4-beta Xylanases/chemistry/*genetics/metabolism, Enzyme Stability, Escherichia coli/genetics, Gene Expression, *Genes, Bacterial, Hydrogen-Ion Concentration, Isoelectric Point, Molecular Sequence Data, Molecular Weight, Polymerase Chain Reaction, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Homology, Amino Acid, Temperature | Metabolism | |
Enzymology | 18083818 | Characterization of a new rhamnogalacturonan acetyl esterase from Bacillus halodurans C-125 with a new putative carbohydrate binding domain. | Navarro-Fernandez J, Martinez-Martinez I, Montoro-Garcia S, Garcia-Carmona F, Takami H, Sanchez-Ferrer A | J Bacteriol | 10.1128/JB.01104-07 | 2007 | Acetylesterase/chemistry/genetics/*metabolism, Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/genetics/*metabolism, Base Sequence, Binding Sites, Carbohydrates/chemistry, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Kinetics, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Structure, Tertiary, Protons, Recombinant Proteins/chemistry/metabolism, Sequence Alignment, Structural Homology, Protein, Substrate Specificity | Metabolism |
Enzymology | 18359284 | Purification of two putative type II NADH dehydrogenases with different substrate specificities from alkaliphilic Bacillus pseudofirmus OF4. | Liu J, Krulwich TA, Hicks DB | Biochim Biophys Acta | 10.1016/j.bbabio.2008.02.004 | 2008 | Amino Acid Sequence, Bacillus/*enzymology/genetics, Bacterial Proteins/genetics/*metabolism, Cloning, Molecular, Escherichia coli/enzymology/genetics, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Genetic Complementation Test, Isoenzymes/genetics/metabolism, Molecular Sequence Data, Mutation, NADH Dehydrogenase/genetics/*metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sodium-Hydrogen Exchangers/metabolism, Spectrometry, Fluorescence, Substrate Specificity | Metabolism |
Enzymology | 18421588 | Cloning, expression and characterization of a glycoside hydrolase family 39 xylosidase from Bacillus halodurans C-125. | Wagschal K, Franqui-Espiet D, Lee CC, Robertson GH, Wong DW | Appl Biochem Biotechnol | 10.1007/s12010-007-8055-5 | 2007 | Adsorption, Bacillus/*enzymology/genetics, Binding Sites, Cloning, Molecular/methods, Enzyme Activation, Enzyme Stability, Enzymes, Immobilized/chemistry, Escherichia coli/*enzymology/genetics, Glycoside Hydrolases/*chemistry/genetics/metabolism, Polysaccharides/*chemistry, Protein Binding, Recombinant Proteins/chemistry/metabolism, Substrate Specificity, Xylosidases/*chemistry/genetics/metabolism | Metabolism |
Pathogenicity | 18665349 | Antibacterial activity of cyclodextrins against Bacillus strains. | Zhang HM, Li Z, Uematsu K, Kobayashi T, Horikoshi K | Arch Microbiol | 10.1007/s00203-008-0415-1 | 2008 | Anti-Bacterial Agents/*pharmacology, Bacillus/*drug effects, Cell Membrane/diagnostic imaging/physiology, Fluorescent Dyes/metabolism, Microbial Viability, Microscopy, Electron, Transmission, Staining and Labeling, Ultrasonography, alpha-Cyclodextrins/*pharmacology, beta-Cyclodextrins/*pharmacology | Metabolism |
Enzymology | 18674896 | Biocatalytic conversion of wheat bran hydrolysate using an immobilized GH43 beta-xylosidase. | Smaali I, Remond C, Skhiri Y, O'Donohue MJ | Bioresour Technol | 10.1016/j.biortech.2008.06.041 | 2008 | Bacillus/*enzymology, Catalysis, *Dietary Fiber, Enzymes, Immobilized/chemistry, Plant Extracts/*chemistry, Triticum/*chemistry, Xylans/*chemistry, Xylose/*chemical synthesis, Xylosidases/*chemistry | |
Metabolism | 19938483 | Expression and characterization of a xylosidase (Bxyl) from Bacillus halodurans C-125. | Liang Y, Li X, Shin H, Chen RR, Mao Z | Sheng Wu Gong Cheng Xue Bao | 2009 | Amino Acid Sequence, Bacillus/classification/enzymology/*genetics, Cloning, Molecular, Escherichia coli/genetics/metabolism, Hydrolysis, Molecular Sequence Data, Recombinant Proteins/genetics/metabolism, Substrate Specificity, Xylose/metabolism, Xylosidases/genetics/*metabolism | Enzymology | |
Enzymology | 20618142 | Enhanced production and characterization of a beta-glucosidase from Bacillus halodurans expressed in Escherichia coli. | Naz S, Ikram N, Rajoka MI, Sadaf S, Akhtar MW | Biochemistry (Mosc) | 10.1134/s0006297910040164 | 2010 | Bacillus/classification/*enzymology, Bacterial Proteins/*chemistry/genetics/metabolism, Escherichia coli/*genetics, Hydrogen-Ion Concentration, Kinetics, Phylogeny, Recombinant Proteins/chemistry/genetics/metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Temperature, beta-Glucosidase/*chemistry/genetics/metabolism | Phylogeny |
Enzymology | 20662376 | Industrial applications of alkaliphiles and their enzymes--past, present and future. | Fujinami S, Fujisawa M | Environ Technol | 10.1080/09593331003762807 | 2010 | Amylases, Bacillus/enzymology/*metabolism, Cyclodextrins, Endo-1,4-beta Xylanases, Industrial Microbiology/*methods, Serine Endopeptidases | Metabolism |
Metabolism | 20678983 | The C-terminal coiled-coil of the bacterial voltage-gated sodium channel NaChBac is not essential for tetramer formation, but stabilizes subunit-to-subunit interactions. | Mio K, Mio M, Arisaka F, Sato M, Sato C | Prog Biophys Mol Biol | 10.1016/j.pbiomolbio.2010.05.002 | 2010 | Bacillus/*metabolism, Biotin/chemistry/metabolism, Cross-Linking Reagents/chemistry, Cytoplasm/chemistry/genetics/metabolism, Electrophoresis, Electrophysiology, Hydrophobic and Hydrophilic Interactions, Immunoprecipitation, Ion Channel Gating/genetics/*physiology, Mutation, Protein Multimerization, Protein Stability, Protein Subunits/chemistry/genetics/metabolism, Sodium Channels/*chemistry/genetics/*metabolism, Ultracentrifugation | Enzymology |
Enzymology | 21046402 | Characterization of a glucose-, xylose-, sucrose-, and D-galactose-stimulated beta-glucosidase from the alkalophilic bacterium Bacillus halodurans C-125. | Xu H, Xiong AS, Zhao W, Tian YS, Peng RH, Chen JM, Yao QH | Curr Microbiol | 10.1007/s00284-010-9766-3 | 2010 | Bacillus/*enzymology, *Carbohydrate Metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Enzyme Activators, Enzyme Inhibitors/metabolism, Enzyme Stability, Escherichia coli/genetics, Gene Expression, Glucosides/metabolism, Hydrogen-Ion Concentration, Kinetics, Metals/metabolism, Molecular Weight, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Substrate Specificity, Temperature, beta-Glucosidase/chemistry/genetics/*metabolism | Metabolism |
21362000 | Improved genetic transformation methods for the model alkaliphile Bacillus halodurans C-125. | Wallace JG, Breaker RR | Lett Appl Microbiol | 10.1111/j.1472-765X.2011.03017.x | 2011 | Bacillus/*genetics, Genetic Techniques, Models, Biological, Plasmids/genetics, *Transformation, Genetic | ||
Enzymology | 21721841 | Multitechnique study on a recombinantly produced Bacillus halodurans laccase and an S-layer/laccase fusion protein. | Ferner-Ortner-Bleckmann J, Schrems A, Ilk N, Egelseer EM, Sleytr UB, Schuster B | Biointerphases | 10.1116/1.3589284 | 2011 | Bacillus/*enzymology/genetics, Cloning, Molecular, Enzymes, Immobilized/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Laccase/*genetics/*metabolism, Membrane Glycoproteins/*genetics/*metabolism, Recombinant Fusion Proteins/genetics/metabolism | Metabolism |
Metabolism | 21786127 | The relationship between a coiled morphology and Mbl in alkaliphilic Bacillus halodurans C-125 at neutral pH values. | Fujinami S, Sato T, Ito M | Extremophiles | 10.1007/s00792-011-0389-9 | 2011 | Bacillus/*cytology/genetics/*metabolism, Bacterial Proteins/*biosynthesis/genetics, Cell Membrane/genetics/*metabolism, Cytoskeletal Proteins/*biosynthesis/genetics, Gene Expression Regulation, Bacterial/*physiology, Hydrogen-Ion Concentration, Peptidoglycan/biosynthesis/genetics, Transcription, Genetic/*physiology | |
Enzymology | 22313111 | Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones. | Xiang DF, Kolb P, Fedorov AA, Xu C, Fedorov EV, Narindoshivili T, Williams HJ, Shoichet BK, Almo SC, Raushel FM | Biochemistry | 10.1021/bi201838b | 2012 | Amidohydrolases/*chemistry/metabolism, Bacillus/*enzymology, Catalytic Domain, Crystallography, X-Ray, Hydrogen Bonding, Hydrolysis, Kinetics, Lactones/*chemistry/metabolism, Listeria monocytogenes/*enzymology, Models, Molecular, Structure-Activity Relationship, Substrate Specificity, Sugar Phosphates/*chemistry/metabolism | Metabolism |
Pathogenicity | 22561371 | OLE RNA protects extremophilic bacteria from alcohol toxicity. | Wallace JG, Zhou Z, Breaker RR | Nucleic Acids Res | 10.1093/nar/gks352 | 2012 | Bacillus/drug effects/genetics/metabolism, Bacterial Proteins/genetics, Ethanol/*toxicity, RNA, Bacterial/chemistry/genetics/*physiology, RNA, Untranslated/chemistry/genetics/*physiology, Sequence Deletion | Metabolism |
Enzymology | 23273277 | Bleach boosting effect of xylanase A from Bacillus halodurans C-125 in ECF bleaching of wheat straw pulp. | Lin XQ, Han SY, Zhang N, Hu H, Zheng SP, Ye YR, Lin Y | Enzyme Microb Technol | 10.1016/j.enzmictec.2012.10.011 | 2012 | Bacillus/*enzymology/genetics, Bacterial Proteins/genetics/metabolism/*pharmacology, Bioreactors, Bleaching Agents/*pharmacology, Cloning, Molecular, Color, Endo-1,4-beta Xylanases/genetics/metabolism/*pharmacology, Hydrogen Peroxide/pharmacology, Microscopy, Electron, Scanning, *Paper, Pichia, Plant Stems/*drug effects/ultrastructure, Recombinant Proteins/metabolism/pharmacology, Tensile Strength, *Triticum | Metabolism |
Metabolism | 23339471 | Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation. | Clark TA, Lu X, Luong K, Dai Q, Boitano M, Turner SW, He C, Korlach J | BMC Biol | 10.1186/1741-7007-11-4 | 2013 | 5-Methylcytosine/*metabolism, DNA Modification Methylases/metabolism, DNA-Binding Proteins/*metabolism, Escherichia coli/enzymology, Genome, Bacterial, Kinetics, Mixed Function Oxygenases, Oxidation-Reduction, Proto-Oncogene Proteins/*metabolism, *Sequence Analysis, DNA, Substrate Specificity | Enzymology |
Metabolism | 23851310 | Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris. | Lin XQ, Liang SL, Han SY, Zheng SP, Ye YR, Lin Y | J Proteomics | 10.1016/j.jprot.2013.06.031 | 2013 | Bacillus/metabolism, Basic-Leucine Zipper Transcription Factors/*metabolism, Citric Acid Cycle, Endo-1,4-beta Xylanases/genetics/metabolism, Endoplasmic Reticulum/metabolism, Fungal Proteins/chemistry/*metabolism, *Gene Expression Regulation, Fungal, Genes, Fungal, Glycolysis, Molecular Chaperones/metabolism, Pentose Phosphate Pathway, Pichia/genetics/*metabolism, Protein Folding, Proteome, *Proteomics, Repressor Proteins/*metabolism, Saccharomyces cerevisiae/metabolism, Saccharomyces cerevisiae Proteins/*metabolism, *Tandem Mass Spectrometry, Transcription Factors/*metabolism, Unfolded Protein Response | Proteome |
Pathogenicity | 27346378 | Narrow-spectrum inhibitors targeting an alternative menaquinone biosynthetic pathway of Helicobacter pylori. | Yamamoto T, Matsui H, Yamaji K, Takahashi T, Overby A, Nakamura M, Matsumoto A, Nonaka K, Sunazuka T, Omura S, Nakano H | J Infect Chemother | 10.1016/j.jiac.2016.05.012 | 2016 | Animals, Biosynthetic Pathways/*drug effects, Docosahexaenoic Acids/antagonists & inhibitors/pharmacology, Drug Resistance, Bacterial/*drug effects, Drug Therapy, Combination, Eicosapentaenoic Acid/antagonists & inhibitors/pharmacology, Female, Helicobacter Infections/drug therapy/*prevention & control, Helicobacter pylori/*drug effects/growth & development/isolation & purification/metabolism, Intercellular Signaling Peptides and Proteins, Mice, Mice, Inbred C57BL, Nucleosides/*biosynthesis, Peptides/antagonists & inhibitors/pharmacology, Vitamin K 2/*pharmacology | Enzymology |
27385575 | Reidentification of Facultatively Alkaliphilic Bacillus sp. C-125 to Bacillus halodurans. | Takami H, Horikoshi K | Biosci Biotechnol Biochem | 10.1271/bbb.63.943 | 1999 | |||
Metabolism | 28351672 | Redesigning pH optimum of Geobacillus sp. TF16 endoxylanase through in silico designed DNA swapping strategy. | Uzuner U, Canakci S, Bektas KI, Sapmaz MT, Belduz AO | Biochimie | 10.1016/j.biochi.2017.03.017 | 2017 | Amino Acid Sequence, Computer Simulation, DNA, Bacterial/chemistry/*genetics, Endo-1,4-beta Xylanases/*chemistry/*genetics/metabolism, Enzyme Stability, Geobacillus/*enzymology, Hydrogen-Ion Concentration, Mutant Proteins/chemistry/genetics/metabolism, *Protein Engineering, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Homology, Amino Acid | Enzymology |
Metabolism | 28710671 | Functional characterization of hormone sensitive-like lipase from Bacillus halodurans: synthesis and recovery of pNP-laurate with high yields. | Dua A, Gupta R | Extremophiles | 10.1007/s00792-017-0949-8 | 2017 | Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/*metabolism, Enzyme Stability, Fatty Acids, Unsaturated/metabolism, Laurates/metabolism, *Protein Denaturation, Sterol Esterase/chemistry/*metabolism, Substrate Specificity | Enzymology |
29218041 | Mrp Antiporters Have Important Roles in Diverse Bacteria and Archaea. | Ito M, Morino M, Krulwich TA | Front Microbiol | 10.3389/fmicb.2017.02325 | 2017 | |||
Enzymology | 31079316 | Characterization of recombinant endo-1,4-beta-xylanase of Bacillus halodurans C-125 and rational identification of hot spot amino acid residues responsible for enhancing thermostability by an in-silico approach. | Mahmood MS, Rasul F, Saleem M, Afroz A, Malik MF, Ashraf NM, Rashid U, Naz S, Zeeshan N | Mol Biol Rep | 10.1007/s11033-019-04751-5 | 2019 | Amino Acids, Bacillus/*enzymology/genetics, Base Sequence/genetics, Cloning, Molecular, Computer Simulation, Endo-1,4-beta Xylanases/chemistry/*genetics/isolation & purification/metabolism, Enzyme Stability/genetics, Kinetics, Models, Molecular, Mutant Proteins/genetics/metabolism, Protein Engineering, Recombinant Proteins/chemistry/genetics/metabolism, Temperature | Metabolism |
Enzymology | 31986559 | Functional Expression and Characterization of Acetyl Xylan Esterases CE Family 7 from Lactobacillus antri and Bacillus halodurans. | Kim MJ, Jang MU, Nam GH, Shin H, Song JR, Kim TJ | J Microbiol Biotechnol | 10.4014/jmb.2001.01004 | 2020 | Acetylesterase/chemistry/*genetics/isolation & purification/*metabolism, Amino Acid Sequence, Bacillus/*enzymology/*genetics, Cloning, Molecular, Enzyme Activation, *Gene Expression, Hydrogen-Ion Concentration, Hydrolysis, Lactobacillus/chemistry/*enzymology/*genetics/isolation & purification, Temperature, Xylans/metabolism | Phylogeny |
32390987 | Assessment of a Potential Role of Dickeya dadantii DSM 18020 as a Pectinase Producer for Utilization in Poultry Diets Based on in silico Analyses. | Dittoe DK, Barabote RD, Rothrock MJ, Ricke SC | Front Microbiol | 10.3389/fmicb.2020.00751 | 2020 | |||
Enzymology | 33047274 | Homology modeling and heterologous expression of highly alkaline subtilisin-like serine protease from Bacillus halodurans C-125. | Tekin A, Uzuner U, Sezen K | Biotechnol Lett | 10.1007/s10529-020-03025-6 | 2020 | Bacillus/chemistry/*ultrastructure, Bacillus subtilis/genetics/ultrastructure, Cloning, Molecular, Enzyme Stability/genetics, Gene Expression Regulation, Bacterial/genetics, Hydrogen-Ion Concentration, *Models, Molecular, Molecular Dynamics Simulation, Proteolysis, Serine Proteases/chemistry/*ultrastructure, Substrate Specificity, Subtilisin/chemistry/*genetics, Temperature | |
Enzymology | 33394289 | Substrate Specificities of GH8, GH39, and GH52 beta-xylosidases from Bacillus halodurans C-125 Toward Substituted Xylooligosaccharides. | Teramoto K, Tsutsui S, Sato T, Fujimoto Z, Kaneko S | Appl Biochem Biotechnol | 10.1007/s12010-020-03451-2 | 2021 | Bacillus/*enzymology, Bacterial Proteins/*chemistry, Glucuronates/*chemistry, Hydrolysis, Oligosaccharides/*chemistry, Substrate Specificity, Xylosidases/*chemistry | |
34354504 | 4-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 alpha-Glucuronidase from Bacillus halodurans C-125. | Yagi H, Maehara T, Tanaka T, Takehara R, Teramoto K, Yaoi K, Kaneko S | J Appl Glycosci (1999) | 10.5458/jag.jag.JAG-2017_016 | 2017 | |||
Enzymology | 34730252 | Molecular cloning and characterization of a novel xylanase from Microbacterium imperiale YD-01. | Tang K, Cui Y, Xiao J, Ding M, Chao H, Wu J, Han Z, Liu J, Li X, Yan D | J Food Biochem | 10.1111/jfbc.13988 | 2021 | Cloning, Molecular, *Endo-1,4-beta Xylanases/genetics/metabolism, Enzyme Stability, Kinetics, Microbacterium | Metabolism |
36511701 | Characteristics of the ErmK Protein of Bacillus halodurans C-125. | Kim SK, Min YH, Jin HJ | Microbiol Spectr | 10.1128/spectrum.02598-22 | 2022 |
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7421 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18197) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18197 | |||
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66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |