Strain identifier

BacDive ID: 1119

Type strain: No

Species: Halalkalibacterium halodurans

Strain Designation: C-125

Strain history: K. Horikoshi C-125.

NCBI tax ID(s): 86665 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7421

BacDive-ID: 1119

DSM-Number: 18197

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Halalkalibacterium halodurans C-125 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 86665
  • Matching level: species

strain history

@refhistory
7421<- JCM <- K. Horikoshi
67770K. Horikoshi C-125.

doi: 10.13145/bacdive1119.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Halalkalibacterium
  • species: Halalkalibacterium halodurans
  • full scientific name: Halalkalibacterium halodurans (Nielsen et al. 1995 ex Boyer et al. 1973) Joshi et al. 2022
  • synonyms

    @refsynonym
    20215Bacillus alcalophilus subsp. halodurans
    20215Bacillus okuhidensis
    20215Bacillus halodurans
    20215Alkalihalobacillus halodurans
    20215Alkalihalobacillus okuhidensis

@ref: 7421

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Halalkalibacterium

species: Halalkalibacterium halodurans

full scientific name: Halalkalibacterium halodurans (Nielsen et al. 1995) Joshi et al. 2022

strain designation: C-125

type strain: no

Culture and growth conditions

culture medium

  • @ref: 7421
  • name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/31
  • composition: Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7421positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

enzymes

  • @ref: 67770
  • value: beta-galactosidase
  • ec: 3.2.1.23

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7421soilJapanJPNAsia
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4299.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2160;97_2613;98_3236;99_4299&stattab=map
  • Last taxonomy: Alkalihalobacillus halodurans
  • 16S sequence: AB598741
  • Sequence Identity:
  • Total samples: 6986
  • soil counts: 1545
  • aquatic counts: 1519
  • animal counts: 3493
  • plant counts: 429

Safety information

risk assessment

  • @ref: 7421
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Bacillus halodurans gene for 16S rRNA, partial sequence, strain: JCM 9153
  • accession: AB598741
  • length: 1413
  • database: ena
  • NCBI tax ID: 86665

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halalkalibacterium halodurans C-125GCA_000011145completencbi272558
66792Alkalihalobacillus halodurans C-125637000020completeimg272558

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.753no
flagellatedyes84.567no
gram-positiveyes86.662no
anaerobicno98.401no
halophileyes71.387no
spore-formingyes95.763no
thermophileno89.057yes
glucose-utilyes91.589no
aerobicyes87.261no
glucose-fermentno92.18no

External links

@ref: 7421

culture collection no.: DSM 18197, ATCC BAA 125, JCM 9153, CGMCC 1.6354, FERM 7344

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics10427704Replication origin region of the chromosome of alkaliphilic Bacillus halodurans C-125.Takami H, Masui N, Nakasone K, Horikoshi KBiosci Biotechnol Biochem10.1271/bbb.63.11341999Alkalies, Bacillus/*genetics/metabolism, Chromosomes, Bacterial/*genetics, DNA Gyrase, DNA Topoisomerases, Type II/biosynthesis/genetics, DNA, Bacterial/biosynthesis/*genetics, Molecular Sequence Data, Open Reading Frames/genetics, Replication Origin/*genetics, Reverse Transcriptase Polymerase Chain ReactionMetabolism
Enzymology10484179Genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125.Takami H, Takaki Y, Nakasone K, Sakiyama T, Maeno G, Sasaki R, Hirama C, Fuji F, Masui NExtremophiles10.1007/s0079200501201999Bacillus/*genetics, Base Sequence, *Chromosomes, Bacterial, Cloning, Molecular, DNA, Bacterial, Physical Chromosome Mapping
Genetics10803979An automated system for genome analysis to support microbial whole-genome shotgun sequencing.Sakiyama T, Takami H, Ogasawara N, Kuhara S, Kozuki T, Doga K, Ohyama A, Horikoshi KBiosci Biotechnol Biochem10.1271/bbb.64.6702000Automation, Bacillus/*genetics, Electronic Data Processing/methods, *Genome, Bacterial, Humans, Sequence Analysis, DNA/*methods, *SoftwarePathogenicity
Metabolism10805564Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view.Takami H, Horikoshi KExtremophiles10.1007/s0079200501432000Alkalies/*metabolism, Bacillus/classification/enzymology/*genetics, Bacillus subtilis/genetics, Chromosome Mapping, Enzymes/metabolism, Gene Library, *Genome, Bacterial, *Industrial Microbiology, Physical Chromosome Mapping, Sequence Analysis, DNAEnzymology
Enzymology10972189Characterization and comparative study of the rrn operons of alkaliphilic Bacillus halodurans C-125.Nakasone K, Masui N, Takaki Y, Sasaki R, Maeno G, Sakiyama T, Hirama C, Fuji F, Takami HExtremophiles10.1007/pl000107132000Alkalies, Bacillus/*genetics, Bacillus subtilis/genetics, Chromosome Mapping, Cloning, Molecular, DNA, Bacterial/*genetics, Electrophoresis, Gel, Pulsed-Field, Endodeoxyribonucleases/metabolism, Gene Library, Hydrogen-Ion Concentration, Open Reading Frames/genetics, Promoter Regions, Genetic/genetics, RNA, Bacterial/analysis/genetics, RNA, Messenger/analysis/genetics, rRNA Operon/*geneticsGenetics
Metabolism11057908The Na+/H+ antiporter of alkaliphilic Bacillus sp.Kitada M, Kosono S, Kudo TExtremophiles10.1007/s0079200700102000Alkalies/pharmacology, Bacillus/chemistry/*genetics/growth & development/metabolism, Bacillus subtilis/chemistry/genetics, Cloning, Molecular, Hydrogen-Ion Concentration, Molecular Sequence Data, Mutation, Open Reading Frames, Restriction Mapping, Sodium-Hydrogen Exchangers/*genetics/metabolismEnzymology
Genetics11058132Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, Fuji F, Hirama C, Nakamura Y, Ogasawara N, Kuhara S, Horikoshi KNucleic Acids Res10.1093/nar/28.21.43172000ATP-Binding Cassette Transporters/genetics, Adaptation, Physiological/genetics, Alkalies/metabolism, Bacillus/chemistry/classification/*genetics/metabolism, Bacillus subtilis/chemistry/*genetics, Bacterial Proteins/genetics/physiology, Base Composition, Biological Transport, Cell Wall/genetics/metabolism, Conserved Sequence/genetics, DNA Transposable Elements/genetics, Databases as Topic, Energy Metabolism, Evolution, Molecular, Gene Transfer, Horizontal/genetics, Genes, Bacterial/genetics/physiology, *Genome, Bacterial, Molecular Sequence Data, Open Reading Frames/genetics, Physical Chromosome Mapping, Protein Biosynthesis, RNA, Transfer/genetics, Replication Origin/genetics, Sequence Homology, Sigma Factor/genetics, Spores, Bacterial/genetics, Transcription, Genetic/genetics, Transposases/geneticsMetabolism
Metabolism11248197The Na(+)-dependence of alkaliphily in Bacillus.Krulwich TA, Ito M, Guffanti AABiochim Biophys Acta10.1016/s0005-2728(00)00285-12001Bacillus/genetics/*metabolism, Cations, Monovalent, Cell Wall/metabolism, Cytoplasm/metabolism, Homeostasis, Hydrogen-Ion Concentration, Ion Transport, Membrane Lipids/metabolism, Models, Chemical, Sodium/*metabolismLipids
Genetics11418576Identification and distribution of new insertion sequences in the genome of alkaliphilic Bacillus halodurans C-125.Takami H, Han CG, Takaki Y, Ohtsubo EJ Bacteriol10.1128/JB.183.14.4345-4356.20012001Bacillus/*genetics/growth & development, Base Sequence, *DNA Transposable Elements, *DNA, Bacterial, *Genome, Bacterial, Introns, Molecular Sequence Data, Phylogeny, TransposasesPhylogeny
Metabolism11699649A globin-coupled oxygen sensor from the facultatively alkaliphilic Bacillus halodurans C-125.Hou S, Belisle C, Lam S, Piatibratov M, Sivozhelezov V, Takami H, Alam MExtremophiles10.1007/s0079201002202001Amino Acid Sequence, Bacillus/genetics/*metabolism, Bacterial Proteins/chemistry/genetics/*metabolism, Carrier Proteins/chemistry/genetics/metabolism, Cloning, Molecular, Globins/chemistry/genetics/*metabolism, Heme-Binding Proteins, Hemeproteins/chemistry/genetics/metabolism, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Oxygen/*metabolism, Protein Structure, Tertiary, Sequence Homology, Amino AcidEnzymology
Enzymology14702308The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase.Zhuang Z, Song F, Takami H, Dunaway-Mariano DJ Bacteriol10.1128/JB.186.2.393-399.20042004Amino Acid Sequence, Bacillus/*enzymology, Catalysis, Gentisates/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Recombinant Proteins/isolation & purification, Thiolester Hydrolases/genetics/*metabolismMetabolism
Enzymology15170110Characterization of endo-beta-N-acetylglucosaminidase from alkaliphilic Bacillus halodurans C-125.Fujita K, Takami H, Yamamoto K, Takegawa KBiosci Biotechnol Biochem10.1271/bbb.68.10592004Amino Acid Sequence, Bacillus/*enzymology/genetics, Catalytic Domain/genetics, Escherichia coli/enzymology/metabolism, Glycosylation, Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase/*genetics/isolation & purification/*metabolism, Molecular Sequence Data, Sequence Alignment, Sequence Homology, Amino Acid, Substrate SpecificityMetabolism
Enzymology15293032A cloned Bacillus halodurans multicopper oxidase exhibiting alkaline laccase activity.Ruijssenaars HJ, Hartmans SAppl Microbiol Biotechnol10.1007/s00253-004-1571-02004Bacillus/*enzymology/genetics, Cloning, Molecular, Industrial Microbiology, Laccase/chemistry/*metabolism, Oxidoreductases/*metabolism, Recombinant Proteins/metabolismMetabolism
Stress15368891Wide-range distribution of insertion sequences identified in B. halodurans among bacilli and a new transposon disseminated in alkaliphilic and thermophilic bacilli.Takami H, Matsuki A, Takaki YDNA Res10.1093/dnares/11.3.1532004Bacillus/*genetics, *DNA Transposable Elements, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Sequence Analysis, DNAGenetics
Enzymology15491996A family 8 glycoside hydrolase from Bacillus halodurans C-125 (BH2105) is a reducing end xylose-releasing exo-oligoxylanase.Honda Y, Kitaoka MJ Biol Chem10.1074/jbc.M4098322002004Bacillus/*enzymology, Carbohydrate Sequence, Chromatography, Thin Layer, DNA/metabolism, DNA Mutational Analysis, Endo-1,4-beta Xylanases/chemistry/*physiology, Escherichia coli/metabolism, Glycoside Hydrolases/*chemistry/*physiology, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Models, Biological, Models, Chemical, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Polymers/chemistry, Protein Sorting Signals, Recombinant Proteins/chemistry, Temperature, Trisaccharides/chemistry, Xylans/chemistry, Xylose/chemistry, Xylosidases/chemistryMetabolism
Enzymology15718242Structural basis for the specificity of the reducing end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125.Fushinobu S, Hidaka M, Honda Y, Wakagi T, Shoun H, Kitaoka MJ Biol Chem10.1074/jbc.M4136932002005Bacillus/enzymology, Binding Sites, Catalysis, Crystallography, X-Ray, Disaccharides/chemistry, Electrons, Glycoside Hydrolases/chemistry, Hydrogen Bonding, Hydrolysis, Kinetics, Ligands, Models, Chemical, Models, Molecular, Mutagenesis, Site-Directed, Oligosaccharides/chemistry, Protein Binding, Protein Conformation, Protein Structure, Secondary, Substrate Specificity, Time Factors, Xylose/*chemistry, Xylosidases/*chemistry
Enzymology15914908The role of conserved arginine residue in loop 4 of glycoside hydrolase family 10 xylanases.Nishimoto M, Kitaoka M, Fushinobu S, Hayashi KBiosci Biotechnol Biochem10.1271/bbb.69.9042005Amino Acid Sequence, Arginine/*chemistry, Bacillus/enzymology, Base Sequence, Clostridium/enzymology, *Conserved Sequence, Endo-1,4-beta Xylanases/*chemistry/metabolism, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Mutation, Protein Binding, Protein Conformation, Protein Structure, Secondary, Sequence AlignmentGenetics
Genetics15936898A novel beta-glucanase gene from Bacillus halodurans C-125.Akita M, Kayatama K, Hatada Y, Ito S, Horikoshi KFEMS Microbiol Lett10.1016/j.femsle.2005.05.0092005Amino Acid Sequence, Bacillus/enzymology/*genetics, DNA, Bacterial/analysis, DNA, Recombinant/genetics, Escherichia coli, *Genes, Bacterial, Genome, Bacterial, Glucan Endo-1,3-beta-D-Glucosidase/*genetics, Molecular Sequence DataEnzymology
Enzymology16003954An alkali-inducible flotillin-like protein from Bacillus halodurans C-125.Zhang HM, Li Z, Tsudome M, Ito S, Takami H, Horikoshi KProtein J10.1007/s10930-004-1519-32005Alkalies/*pharmacology, Amino Acid Sequence, Bacillus/*chemistry, Base Sequence, Blotting, Northern, Blotting, Western, Cloning, Molecular, DNA Primers, Electrophoresis, Polyacrylamide Gel, Mass Spectrometry, Membrane Proteins/chemistry/genetics/*isolation & purification, Molecular Sequence Data, Sequence Homology, Amino AcidGenetics
Metabolism16230347A structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition.Boraston AB, Healey M, Klassen J, Ficko-Blean E, Lammerts van Bueren A, Law VJ Biol Chem10.1074/jbc.M5099582002005Amino Acid Sequence, Bacillus/*enzymology/*genetics, Bacterial Proteins/chemistry/genetics/metabolism, Conserved Sequence, Crystallography, X-Ray, Dimerization, Glucans/*metabolism, Molecular Sequence Data, Oligosaccharides/metabolism, Protein Structure, Secondary, Protein Structure, Tertiary, Starch/*metabolism, Structure-Activity Relationship, alpha-Amylases/chemistry/*genetics/*metabolismGenetics
16233226A kinetic study on pH-activity relationship of XynA from alkaliphilic Bacillus halodurans C-125 using aryl-xylobiosides.Nishimoto M, Honda Y, Kitaoka M, Hayashi KJ Biosci Bioeng10.1016/s1389-1723(02)80079-22002
Enzymology16233324Employing chimeric xylanases to identify regions of an alkaline xylanase participating in enzyme activity at basic pH.Nishimoto M, Kitaoka M, Hayashi KJ Biosci BioengS1389-1723(02)80215-82002
Enzymology16511021Crystallization and preliminary X-ray analysis of reducing-end xylose-releasing exo-oligoxylanase from Bacillus halodurans C-125.Honda Y, Fushinobu S, Hidaka M, Wakagi T, Shoun H, Kitaoka MActa Crystallogr Sect F Struct Biol Cryst Commun10.1107/S17443091050036352005Bacillus/*enzymology, Bacterial Proteins/chemistry/isolation & purification, Crystallization, Endo-1,4-beta Xylanases/*chemistry/isolation & purification, Oxidation-Reduction, X-Ray Diffraction, Xylose/*metabolism, Xylosidases/*chemistry/isolation & purificationPhylogeny
Enzymology16774742A primary sodium pump gene of the moderate halophile Halobacillus dabanensis exhibits secondary antiporter properties.Yang L, Jiang J, Zhang B, Zhao B, Wang L, Yang SSBiochem Biophys Res Commun10.1016/j.bbrc.2006.05.1812006Amino Acid Sequence, Antiporters/genetics/*physiology, Bacillaceae/*enzymology, Bacillus/enzymology/genetics, Base Sequence, Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology, Cell Membrane/enzymology, Cloning, Molecular, DNA, Bacterial/genetics, Escherichia coli/drug effects/enzymology/genetics, Genes, Bacterial/genetics/*physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Multienzyme Complexes/physiology, NADH Dehydrogenase/physiology, NADH, NADPH Oxidoreductases/physiology, Sodium-Potassium-Exchanging ATPase/genetics/*physiology, Uncoupling Agents/pharmacologyGenetics
Phylogeny16896606Expression in Escherichia coli and characterization of beta-xylosidases GH39 and GH-43 from Bacillus halodurans C-125.Smaali I, Remond C, O'Donohue MJAppl Microbiol Biotechnol10.1007/s00253-006-0512-52006Bacillus/classification/*enzymology/genetics, Dietary Fiber/metabolism, Escherichia coli/*genetics, Hydrogen-Ion Concentration, Phylogeny, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Substrate Specificity, Temperature, Xylosidases/chemistry/genetics/*isolation & purification/metabolismEnzymology
Enzymology17021659Cloning and characterization of dihydrofolate reductase from a facultative alkaliphilic and halotolerant bacillus strain.Redecke L, Brehm MA, Bredehorst RExtremophiles10.1007/s00792-006-0013-62006*Adaptation, Physiological, Amino Acid Sequence, Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/genetics/*metabolism, *Cloning, Molecular, Conserved Sequence, Enzyme Stability, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Potassium Chloride/metabolism, Protein Structure, Secondary, Recombinant Proteins/metabolism, Sequence Alignment, Sequence Analysis, Protein, Sodium Chloride/metabolism, Temperature, Tetrahydrofolate Dehydrogenase/chemistry/genetics/*metabolism, Urea/metabolismMetabolism
Metabolism17085596Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic.McClerren AL, Cooper LE, Quan C, Thomas PM, Kelleher NL, van der Donk WAProc Natl Acad Sci U S A10.1073/pnas.06060881032006Acetoacetates/metabolism, Amino Acid Sequence, Bacillus/chemistry/genetics/metabolism, Bacterial Proteins/*biosynthesis/*chemistry, Bacteriocins/*biosynthesis/*chemistry, Factor Xa/metabolism, Iodoacetamide/chemistry/metabolism, Molecular Sequence Data, Protein Engineering, Sequence Alignment, Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationGenetics
Genetics17233677Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125.Lawton EM, Cotter PD, Hill C, Ross RPFEMS Microbiol Lett10.1111/j.1574-6968.2006.00539.x2007Amino Acid Sequence, Anti-Bacterial Agents/*biosynthesis/chemistry/*isolation & purification, Antibiosis, Bacillus/genetics/*metabolism, Bacteriocins/*biosynthesis/chemistry/genetics/*isolation & purification, Computational Biology, Gene Order, Genes, Bacterial, Genome, Bacterial, Gram-Positive Bacteria/drug effects/growth & development, Mass Spectrometry, Microbial Sensitivity Tests, Molecular Sequence Data, Multigene Family, Mutagenesis, Site-Directed, Peptides/isolation & purification/pharmacologyEnzymology
Phylogeny17302160Isolation and identification of two xylanase-producing extremely alkali-tolerant strains of Bacillus halodurans from Turpan in China.Yi X, Xie ZJ, Deng AH, Wang N, Erkin RWei Sheng Wu Xue Bao2006Bacillus/classification/enzymology/*isolation & purification/physiology, Endo-1,4-beta Xylanases/*biosynthesis, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/geneticsEnzymology
Enzymology17341817High-level heterologous expression of Bacillus halodurans putative xylanase xyn11a (BH0899) in Kluyveromyces lactis.Wamalwa BM, Zhao G, Sakka M, Shiundu PM, Kimura T, Sakka KBiosci Biotechnol Biochem10.1271/bbb.604772007Bacillus/*enzymology, Bacterial Proteins/*biosynthesis/genetics, Kluyveromyces/*enzymology, Plasmids, Promoter Regions, Genetic, Recombinant Proteins/biosynthesis/genetics, Xylosidases/*biosynthesis/genetics
Enzymology17383976Molecular anatomy of the alkaliphilic xylanase from Bacillus halodurans C-125.Nishimoto M, Fushinobu S, Miyanaga A, Kitaoka M, Hayashi KJ Biochem10.1093/jb/mvm0722007Amino Acid Sequence, Amino Acid Substitution, Asparagine/chemistry, Bacillus/enzymology, Clostridium/enzymology, Crystallography, X-Ray, Endo-1,4-beta Xylanases/*chemistry/genetics/metabolism, Hydrogen Bonding, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Protein Structure, Secondary, Sequence Alignment, Serine/chemistryGenetics
Enzymology18051350Cloning, characterization, and expression of xylanase A gene from Paenibacillus sp. DG-22 in Escherichia coli.Lee TH, Lim PO, Lee YEJ Microbiol Biotechnol2007Amino Acid Sequence, Bacteria/*enzymology/*genetics, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA Primers/genetics, DNA, Bacterial/genetics, Endo-1,4-beta Xylanases/chemistry/*genetics/metabolism, Enzyme Stability, Escherichia coli/genetics, Gene Expression, *Genes, Bacterial, Hydrogen-Ion Concentration, Isoelectric Point, Molecular Sequence Data, Molecular Weight, Polymerase Chain Reaction, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Homology, Amino Acid, TemperatureMetabolism
Enzymology18083818Characterization of a new rhamnogalacturonan acetyl esterase from Bacillus halodurans C-125 with a new putative carbohydrate binding domain.Navarro-Fernandez J, Martinez-Martinez I, Montoro-Garcia S, Garcia-Carmona F, Takami H, Sanchez-Ferrer AJ Bacteriol10.1128/JB.01104-072007Acetylesterase/chemistry/genetics/*metabolism, Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/genetics/*metabolism, Base Sequence, Binding Sites, Carbohydrates/chemistry, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Kinetics, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Structure, Tertiary, Protons, Recombinant Proteins/chemistry/metabolism, Sequence Alignment, Structural Homology, Protein, Substrate SpecificityMetabolism
Enzymology18359284Purification of two putative type II NADH dehydrogenases with different substrate specificities from alkaliphilic Bacillus pseudofirmus OF4.Liu J, Krulwich TA, Hicks DBBiochim Biophys Acta10.1016/j.bbabio.2008.02.0042008Amino Acid Sequence, Bacillus/*enzymology/genetics, Bacterial Proteins/genetics/*metabolism, Cloning, Molecular, Escherichia coli/enzymology/genetics, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Genetic Complementation Test, Isoenzymes/genetics/metabolism, Molecular Sequence Data, Mutation, NADH Dehydrogenase/genetics/*metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sodium-Hydrogen Exchangers/metabolism, Spectrometry, Fluorescence, Substrate SpecificityMetabolism
Enzymology18421588Cloning, expression and characterization of a glycoside hydrolase family 39 xylosidase from Bacillus halodurans C-125.Wagschal K, Franqui-Espiet D, Lee CC, Robertson GH, Wong DWAppl Biochem Biotechnol10.1007/s12010-007-8055-52007Adsorption, Bacillus/*enzymology/genetics, Binding Sites, Cloning, Molecular/methods, Enzyme Activation, Enzyme Stability, Enzymes, Immobilized/chemistry, Escherichia coli/*enzymology/genetics, Glycoside Hydrolases/*chemistry/genetics/metabolism, Polysaccharides/*chemistry, Protein Binding, Recombinant Proteins/chemistry/metabolism, Substrate Specificity, Xylosidases/*chemistry/genetics/metabolismMetabolism
Pathogenicity18665349Antibacterial activity of cyclodextrins against Bacillus strains.Zhang HM, Li Z, Uematsu K, Kobayashi T, Horikoshi KArch Microbiol10.1007/s00203-008-0415-12008Anti-Bacterial Agents/*pharmacology, Bacillus/*drug effects, Cell Membrane/diagnostic imaging/physiology, Fluorescent Dyes/metabolism, Microbial Viability, Microscopy, Electron, Transmission, Staining and Labeling, Ultrasonography, alpha-Cyclodextrins/*pharmacology, beta-Cyclodextrins/*pharmacologyMetabolism
Enzymology18674896Biocatalytic conversion of wheat bran hydrolysate using an immobilized GH43 beta-xylosidase.Smaali I, Remond C, Skhiri Y, O'Donohue MJBioresour Technol10.1016/j.biortech.2008.06.0412008Bacillus/*enzymology, Catalysis, *Dietary Fiber, Enzymes, Immobilized/chemistry, Plant Extracts/*chemistry, Triticum/*chemistry, Xylans/*chemistry, Xylose/*chemical synthesis, Xylosidases/*chemistry
Metabolism19938483Expression and characterization of a xylosidase (Bxyl) from Bacillus halodurans C-125.Liang Y, Li X, Shin H, Chen RR, Mao ZSheng Wu Gong Cheng Xue Bao2009Amino Acid Sequence, Bacillus/classification/enzymology/*genetics, Cloning, Molecular, Escherichia coli/genetics/metabolism, Hydrolysis, Molecular Sequence Data, Recombinant Proteins/genetics/metabolism, Substrate Specificity, Xylose/metabolism, Xylosidases/genetics/*metabolismEnzymology
Enzymology20618142Enhanced production and characterization of a beta-glucosidase from Bacillus halodurans expressed in Escherichia coli.Naz S, Ikram N, Rajoka MI, Sadaf S, Akhtar MWBiochemistry (Mosc)10.1134/s00062979100401642010Bacillus/classification/*enzymology, Bacterial Proteins/*chemistry/genetics/metabolism, Escherichia coli/*genetics, Hydrogen-Ion Concentration, Kinetics, Phylogeny, Recombinant Proteins/chemistry/genetics/metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Temperature, beta-Glucosidase/*chemistry/genetics/metabolismPhylogeny
Enzymology20662376Industrial applications of alkaliphiles and their enzymes--past, present and future.Fujinami S, Fujisawa MEnviron Technol10.1080/095933310037628072010Amylases, Bacillus/enzymology/*metabolism, Cyclodextrins, Endo-1,4-beta Xylanases, Industrial Microbiology/*methods, Serine EndopeptidasesMetabolism
Metabolism20678983The C-terminal coiled-coil of the bacterial voltage-gated sodium channel NaChBac is not essential for tetramer formation, but stabilizes subunit-to-subunit interactions.Mio K, Mio M, Arisaka F, Sato M, Sato CProg Biophys Mol Biol10.1016/j.pbiomolbio.2010.05.0022010Bacillus/*metabolism, Biotin/chemistry/metabolism, Cross-Linking Reagents/chemistry, Cytoplasm/chemistry/genetics/metabolism, Electrophoresis, Electrophysiology, Hydrophobic and Hydrophilic Interactions, Immunoprecipitation, Ion Channel Gating/genetics/*physiology, Mutation, Protein Multimerization, Protein Stability, Protein Subunits/chemistry/genetics/metabolism, Sodium Channels/*chemistry/genetics/*metabolism, UltracentrifugationEnzymology
Enzymology21046402Characterization of a glucose-, xylose-, sucrose-, and D-galactose-stimulated beta-glucosidase from the alkalophilic bacterium Bacillus halodurans C-125.Xu H, Xiong AS, Zhao W, Tian YS, Peng RH, Chen JM, Yao QHCurr Microbiol10.1007/s00284-010-9766-32010Bacillus/*enzymology, *Carbohydrate Metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Enzyme Activators, Enzyme Inhibitors/metabolism, Enzyme Stability, Escherichia coli/genetics, Gene Expression, Glucosides/metabolism, Hydrogen-Ion Concentration, Kinetics, Metals/metabolism, Molecular Weight, Recombinant Proteins/chemistry/genetics/isolation & purification/metabolism, Substrate Specificity, Temperature, beta-Glucosidase/chemistry/genetics/*metabolismMetabolism
21362000Improved genetic transformation methods for the model alkaliphile Bacillus halodurans C-125.Wallace JG, Breaker RRLett Appl Microbiol10.1111/j.1472-765X.2011.03017.x2011Bacillus/*genetics, Genetic Techniques, Models, Biological, Plasmids/genetics, *Transformation, Genetic
Enzymology21721841Multitechnique study on a recombinantly produced Bacillus halodurans laccase and an S-layer/laccase fusion protein.Ferner-Ortner-Bleckmann J, Schrems A, Ilk N, Egelseer EM, Sleytr UB, Schuster BBiointerphases10.1116/1.35892842011Bacillus/*enzymology/genetics, Cloning, Molecular, Enzymes, Immobilized/genetics/metabolism, Escherichia coli/genetics/metabolism, Gene Expression, Laccase/*genetics/*metabolism, Membrane Glycoproteins/*genetics/*metabolism, Recombinant Fusion Proteins/genetics/metabolismMetabolism
Metabolism21786127The relationship between a coiled morphology and Mbl in alkaliphilic Bacillus halodurans C-125 at neutral pH values.Fujinami S, Sato T, Ito MExtremophiles10.1007/s00792-011-0389-92011Bacillus/*cytology/genetics/*metabolism, Bacterial Proteins/*biosynthesis/genetics, Cell Membrane/genetics/*metabolism, Cytoskeletal Proteins/*biosynthesis/genetics, Gene Expression Regulation, Bacterial/*physiology, Hydrogen-Ion Concentration, Peptidoglycan/biosynthesis/genetics, Transcription, Genetic/*physiology
Enzymology22313111Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones.Xiang DF, Kolb P, Fedorov AA, Xu C, Fedorov EV, Narindoshivili T, Williams HJ, Shoichet BK, Almo SC, Raushel FMBiochemistry10.1021/bi201838b2012Amidohydrolases/*chemistry/metabolism, Bacillus/*enzymology, Catalytic Domain, Crystallography, X-Ray, Hydrogen Bonding, Hydrolysis, Kinetics, Lactones/*chemistry/metabolism, Listeria monocytogenes/*enzymology, Models, Molecular, Structure-Activity Relationship, Substrate Specificity, Sugar Phosphates/*chemistry/metabolismMetabolism
Pathogenicity22561371OLE RNA protects extremophilic bacteria from alcohol toxicity.Wallace JG, Zhou Z, Breaker RRNucleic Acids Res10.1093/nar/gks3522012Bacillus/drug effects/genetics/metabolism, Bacterial Proteins/genetics, Ethanol/*toxicity, RNA, Bacterial/chemistry/genetics/*physiology, RNA, Untranslated/chemistry/genetics/*physiology, Sequence DeletionMetabolism
Enzymology23273277Bleach boosting effect of xylanase A from Bacillus halodurans C-125 in ECF bleaching of wheat straw pulp.Lin XQ, Han SY, Zhang N, Hu H, Zheng SP, Ye YR, Lin YEnzyme Microb Technol10.1016/j.enzmictec.2012.10.0112012Bacillus/*enzymology/genetics, Bacterial Proteins/genetics/metabolism/*pharmacology, Bioreactors, Bleaching Agents/*pharmacology, Cloning, Molecular, Color, Endo-1,4-beta Xylanases/genetics/metabolism/*pharmacology, Hydrogen Peroxide/pharmacology, Microscopy, Electron, Scanning, *Paper, Pichia, Plant Stems/*drug effects/ultrastructure, Recombinant Proteins/metabolism/pharmacology, Tensile Strength, *TriticumMetabolism
Metabolism23339471Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation.Clark TA, Lu X, Luong K, Dai Q, Boitano M, Turner SW, He C, Korlach JBMC Biol10.1186/1741-7007-11-420135-Methylcytosine/*metabolism, DNA Modification Methylases/metabolism, DNA-Binding Proteins/*metabolism, Escherichia coli/enzymology, Genome, Bacterial, Kinetics, Mixed Function Oxygenases, Oxidation-Reduction, Proto-Oncogene Proteins/*metabolism, *Sequence Analysis, DNA, Substrate SpecificityEnzymology
Metabolism23851310Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris.Lin XQ, Liang SL, Han SY, Zheng SP, Ye YR, Lin YJ Proteomics10.1016/j.jprot.2013.06.0312013Bacillus/metabolism, Basic-Leucine Zipper Transcription Factors/*metabolism, Citric Acid Cycle, Endo-1,4-beta Xylanases/genetics/metabolism, Endoplasmic Reticulum/metabolism, Fungal Proteins/chemistry/*metabolism, *Gene Expression Regulation, Fungal, Genes, Fungal, Glycolysis, Molecular Chaperones/metabolism, Pentose Phosphate Pathway, Pichia/genetics/*metabolism, Protein Folding, Proteome, *Proteomics, Repressor Proteins/*metabolism, Saccharomyces cerevisiae/metabolism, Saccharomyces cerevisiae Proteins/*metabolism, *Tandem Mass Spectrometry, Transcription Factors/*metabolism, Unfolded Protein ResponseProteome
Pathogenicity27346378Narrow-spectrum inhibitors targeting an alternative menaquinone biosynthetic pathway of Helicobacter pylori.Yamamoto T, Matsui H, Yamaji K, Takahashi T, Overby A, Nakamura M, Matsumoto A, Nonaka K, Sunazuka T, Omura S, Nakano HJ Infect Chemother10.1016/j.jiac.2016.05.0122016Animals, Biosynthetic Pathways/*drug effects, Docosahexaenoic Acids/antagonists & inhibitors/pharmacology, Drug Resistance, Bacterial/*drug effects, Drug Therapy, Combination, Eicosapentaenoic Acid/antagonists & inhibitors/pharmacology, Female, Helicobacter Infections/drug therapy/*prevention & control, Helicobacter pylori/*drug effects/growth & development/isolation & purification/metabolism, Intercellular Signaling Peptides and Proteins, Mice, Mice, Inbred C57BL, Nucleosides/*biosynthesis, Peptides/antagonists & inhibitors/pharmacology, Vitamin K 2/*pharmacologyEnzymology
27385575Reidentification of Facultatively Alkaliphilic Bacillus sp. C-125 to Bacillus halodurans.Takami H, Horikoshi KBiosci Biotechnol Biochem10.1271/bbb.63.9431999
Metabolism28351672Redesigning pH optimum of Geobacillus sp. TF16 endoxylanase through in silico designed DNA swapping strategy.Uzuner U, Canakci S, Bektas KI, Sapmaz MT, Belduz AOBiochimie10.1016/j.biochi.2017.03.0172017Amino Acid Sequence, Computer Simulation, DNA, Bacterial/chemistry/*genetics, Endo-1,4-beta Xylanases/*chemistry/*genetics/metabolism, Enzyme Stability, Geobacillus/*enzymology, Hydrogen-Ion Concentration, Mutant Proteins/chemistry/genetics/metabolism, *Protein Engineering, Recombinant Proteins/chemistry/genetics/metabolism, Sequence Homology, Amino AcidEnzymology
Metabolism28710671Functional characterization of hormone sensitive-like lipase from Bacillus halodurans: synthesis and recovery of pNP-laurate with high yields.Dua A, Gupta RExtremophiles10.1007/s00792-017-0949-82017Bacillus/*enzymology/genetics, Bacterial Proteins/chemistry/*metabolism, Enzyme Stability, Fatty Acids, Unsaturated/metabolism, Laurates/metabolism, *Protein Denaturation, Sterol Esterase/chemistry/*metabolism, Substrate SpecificityEnzymology
29218041Mrp Antiporters Have Important Roles in Diverse Bacteria and Archaea.Ito M, Morino M, Krulwich TAFront Microbiol10.3389/fmicb.2017.023252017
Enzymology31079316Characterization of recombinant endo-1,4-beta-xylanase of Bacillus halodurans C-125 and rational identification of hot spot amino acid residues responsible for enhancing thermostability by an in-silico approach.Mahmood MS, Rasul F, Saleem M, Afroz A, Malik MF, Ashraf NM, Rashid U, Naz S, Zeeshan NMol Biol Rep10.1007/s11033-019-04751-52019Amino Acids, Bacillus/*enzymology/genetics, Base Sequence/genetics, Cloning, Molecular, Computer Simulation, Endo-1,4-beta Xylanases/chemistry/*genetics/isolation & purification/metabolism, Enzyme Stability/genetics, Kinetics, Models, Molecular, Mutant Proteins/genetics/metabolism, Protein Engineering, Recombinant Proteins/chemistry/genetics/metabolism, TemperatureMetabolism
Enzymology31986559Functional Expression and Characterization of Acetyl Xylan Esterases CE Family 7 from Lactobacillus antri and Bacillus halodurans.Kim MJ, Jang MU, Nam GH, Shin H, Song JR, Kim TJJ Microbiol Biotechnol10.4014/jmb.2001.010042020Acetylesterase/chemistry/*genetics/isolation & purification/*metabolism, Amino Acid Sequence, Bacillus/*enzymology/*genetics, Cloning, Molecular, Enzyme Activation, *Gene Expression, Hydrogen-Ion Concentration, Hydrolysis, Lactobacillus/chemistry/*enzymology/*genetics/isolation & purification, Temperature, Xylans/metabolismPhylogeny
32390987Assessment of a Potential Role of Dickeya dadantii DSM 18020 as a Pectinase Producer for Utilization in Poultry Diets Based on in silico Analyses.Dittoe DK, Barabote RD, Rothrock MJ, Ricke SCFront Microbiol10.3389/fmicb.2020.007512020
Enzymology33047274Homology modeling and heterologous expression of highly alkaline subtilisin-like serine protease from Bacillus halodurans C-125.Tekin A, Uzuner U, Sezen KBiotechnol Lett10.1007/s10529-020-03025-62020Bacillus/chemistry/*ultrastructure, Bacillus subtilis/genetics/ultrastructure, Cloning, Molecular, Enzyme Stability/genetics, Gene Expression Regulation, Bacterial/genetics, Hydrogen-Ion Concentration, *Models, Molecular, Molecular Dynamics Simulation, Proteolysis, Serine Proteases/chemistry/*ultrastructure, Substrate Specificity, Subtilisin/chemistry/*genetics, Temperature
Enzymology33394289Substrate Specificities of GH8, GH39, and GH52 beta-xylosidases from Bacillus halodurans C-125 Toward Substituted Xylooligosaccharides.Teramoto K, Tsutsui S, Sato T, Fujimoto Z, Kaneko SAppl Biochem Biotechnol10.1007/s12010-020-03451-22021Bacillus/*enzymology, Bacterial Proteins/*chemistry, Glucuronates/*chemistry, Hydrolysis, Oligosaccharides/*chemistry, Substrate Specificity, Xylosidases/*chemistry
343545044-O-Methyl Modifications of Glucuronic Acids in Xylans Are Indispensable for Substrate Discrimination by GH67 alpha-Glucuronidase from Bacillus halodurans C-125.Yagi H, Maehara T, Tanaka T, Takehara R, Teramoto K, Yaoi K, Kaneko SJ Appl Glycosci (1999)10.5458/jag.jag.JAG-2017_0162017
Enzymology34730252Molecular cloning and characterization of a novel xylanase from Microbacterium imperiale YD-01.Tang K, Cui Y, Xiao J, Ding M, Chao H, Wu J, Han Z, Liu J, Li X, Yan DJ Food Biochem10.1111/jfbc.139882021Cloning, Molecular, *Endo-1,4-beta Xylanases/genetics/metabolism, Enzyme Stability, Kinetics, MicrobacteriumMetabolism
36511701Characteristics of the ErmK Protein of Bacillus halodurans C-125.Kim SK, Min YH, Jin HJMicrobiol Spectr10.1128/spectrum.02598-222022

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