Strain identifier

BacDive ID: 11152

Type strain: Yes

Species: Nocardioides iriomotensis

Strain Designation: IR27-S3

Culture col. no.: DSM 25935, JCM 17985, KACC 14926, NBRC 105384

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18127

BacDive-ID: 11152

DSM-Number: 25935

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Nocardioides iriomotensis IR27-S3 is a mesophilic bacterium that was isolated from soil.

strain history: <- NBRC <- M. Hayakawa, Univ. Yamanashi; IR27-S3

doi: 10.13145/bacdive11152.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides iriomotensis
  • full scientific name: Nocardioides iriomotensis Yamamura et al. 2011

@ref: 18127

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides iriomotensis

full scientific name: Nocardioides iriomotensis Yamamura et al. 2011

strain designation: IR27-S3

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 18127
  • name: RICH MEDIUM (DSMZ Medium 736)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium736.pdf

culture temp

  • @ref: 18127
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 18127
  • sample type: soil
  • geographic location: Okinawa, Iriomote Island
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 18127
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18127
  • description: Nocardioides iriomotensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB544079
  • length: 1463
  • database: ena
  • NCBI tax ID: 715784

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nocardioides iriomotensis NBRC 105384GCA_004168035contigncbi715784
66792Nocardioides iriomotensis strain NBRC 105384715784.3wgspatric715784

GC content

  • @ref: 18127
  • GC-content: 73.7

External links

@ref: 18127

culture collection no.: DSM 25935, JCM 17985, KACC 14926, NBRC 105384

straininfo link

@refpassport
20218http://www.straininfo.net/strains/869171
20218http://www.straininfo.net/strains/867095
20218http://www.straininfo.net/strains/867096

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18127Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25935)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25935
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)