Strain identifier
BacDive ID: 11152
Type strain: 
Species: Nocardioides iriomotensis
Strain Designation: IR27-S3
Culture col. no.: DSM 25935, JCM 17985, KACC 14926, NBRC 105384
General
@ref: 18127
BacDive-ID: 11152
DSM-Number: 25935
keywords: Bacteria, 16S sequence, genome sequence, mesophilic
description: Nocardioides iriomotensis IR27-S3 is a mesophilic bacterium that was isolated from soil.
strain history: <- NBRC <- M. Hayakawa, Univ. Yamanashi; IR27-S3
doi: 10.13145/bacdive11152.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides iriomotensis
- full scientific name: Nocardioides iriomotensis Yamamura et al. 2011
@ref: 18127
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides iriomotensis
full scientific name: Nocardioides iriomotensis Yamamura et al. 2011
strain designation: IR27-S3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18127
- name: RICH MEDIUM (DSMZ Medium 736)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium736.pdf
culture temp
- @ref: 18127
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 18127
- sample type: soil
- geographic location: Okinawa, Iriomote Island
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 18127
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18127
- description: Nocardioides iriomotensis gene for 16S ribosomal RNA, partial sequence
- accession: AB544079
- length: 1463
- database: ena
- NCBI tax ID: 715784
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardioides iriomotensis NBRC 105384 | GCA_004168035 | contig | ncbi | 715784 |
| 66792 | Nocardioides iriomotensis strain NBRC 105384 | 715784.3 | wgs | patric | 715784 |
GC content
- @ref: 18127
- GC-content: 73.7
External links
@ref: 18127
culture collection no.: DSM 25935, JCM 17985, KACC 14926, NBRC 105384
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/869171 |
| 20218 | http://www.straininfo.net/strains/867095 |
| 20218 | http://www.straininfo.net/strains/867096 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18127 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25935) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25935 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |