Strain identifier
BacDive ID: 11137
Type strain: 
Species: Nocardioides islandensis
Strain Designation: MSL-26
Strain history: <- CJ Kim, KRIBB
NCBI tax ID(s): 433663 (species)
version 8.1 (current version)
General
@ref: 8036
BacDive-ID: 11137
DSM-Number: 19321
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Nocardioides islandensis MSL-26 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, farming field.
NCBI tax id
- NCBI tax id: 433663
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8036 | <- Chang-Jin Kim; MSL-26 |
| 67771 | <- CJ Kim, KRIBB |
doi: 10.13145/bacdive11137.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides islandensis
- full scientific name: Nocardioides islandensis corrig. Dastager et al. 2009
synonyms
- @ref: 20215
- synonym: Nocardioides islandiensis
@ref: 8036
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides islandensis
full scientific name: Nocardioides islandensis Dastager et al. 2009
strain designation: MSL-26
type strain: yes
Morphology
cell morphology
| @ref | gram stain | motility | confidence |
|---|---|---|---|
| 67771 | positive | ||
| 69480 | no | 97.003 | |
| 69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 8036
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8036 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.98
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 8036 | soil, farming field | Bikeum Island | Republic of Korea | KOR | Asia |
| 67771 | From farming field | Bikeum island | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 8036
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8036
- description: Nocardioides islandensis strain MSL 26 16S ribosomal RNA gene, partial sequence
- accession: EF466123
- length: 1501
- database: ena
- NCBI tax ID: 433663
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardioides islandensis KCTC 19275 | GCA_015352455 | contig | ncbi | 433663 |
| 66792 | Nocardioides islandensis strain KCTC 19275 | 433663.4 | wgs | patric | 433663 |
GC content
- @ref: 8036
- GC-content: 71.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 52 | no |
| gram-positive | yes | 91.232 | no |
| anaerobic | no | 98.527 | no |
| halophile | no | 95.64 | no |
| spore-forming | no | 85.254 | no |
| glucose-util | yes | 88.008 | no |
| aerobic | yes | 91.881 | yes |
| flagellated | no | 98.929 | no |
| thermophile | no | 96.773 | yes |
| motile | no | 96.55 | no |
| glucose-ferment | no | 88.138 | no |
External links
@ref: 8036
culture collection no.: DSM 19321, KCTC 19275, MSL 26
straininfo link
- @ref: 80386
- straininfo: 398559
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18071922 | Nocardioides islandiensis sp. nov., isolated from soil in Bigeum Island Korea. | Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ | Antonie Van Leeuwenhoek | 10.1007/s10482-007-9217-8 | 2007 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 28866995 | Nocardioides taihuensis sp. nov., isolated from fresh water lake sediment. | Qu JH, Li XD, Li HF | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002163 | 2017 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Lakes/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8036 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19321) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19321 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 80386 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398559.1 | StrainInfo: A central database for resolving microbial strain identifiers |