Strain identifier
BacDive ID: 11101
Type strain: 
Species: Nocardioides simplex
Strain history: IAM 1398 <-- H. Iizuka and K. Komagata P-18.
NCBI tax ID(s): 2045 (species)
version 8.1 (current version)
General
@ref: 8702
BacDive-ID: 11101
DSM-Number: 20299
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardioides simplex DSM 20299 is a mesophilic bacterium that was isolated from Soil of petroleum zone.
NCBI tax id
- NCBI tax id: 2045
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8702 | <- H.G. Schlegel <- K. Komagata <- IAM (Brevibacterium lipolyticum) |
| 67770 | IAM 1398 <-- H. Iizuka and K. Komagata P-18. |
doi: 10.13145/bacdive11101.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides simplex
- full scientific name: Nocardioides simplex (Jensen 1934) O'Donnell et al. 1983
synonyms
@ref synonym 20215 Arthrobacter simplex 20215 Corynebacterium simplex 20215 Pimelobacter simplex
@ref: 8702
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides simplex
full scientific name: Nocardioides simplex (Jensen 1934) O'Donnell et al. 1983 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 8702
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8702 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
murein
- @ref: 8702
- murein short key: A41.01
- type: A3gamma LL-Dpm-Gly
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil of petroleum zone
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_6659.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_452;97_518;98_4911;99_6659&stattab=map
- Last taxonomy: Pimelobacter simplex
- 16S sequence: AF005010
- Sequence Identity:
- Total samples: 374
- soil counts: 197
- aquatic counts: 68
- animal counts: 61
- plant counts: 48
Safety information
risk assessment
- @ref: 8702
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Nocardioides simplex 16S ribosomal RNA gene, partial sequence
- accession: AF005010
- length: 1474
- database: ena
- NCBI tax ID: 2045
GC content
| @ref | GC-content | method |
|---|---|---|
| 8702 | 70.7 | |
| 67770 | 73.5 | thermal denaturation, midpoint method (Tm) |
| 67770 | 70.7 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 8702
culture collection no.: DSM 20299, IAM 1398, JCM 1366, IFO 12679, KCTC 9621, NBRC 12679
straininfo link
- @ref: 80350
- straininfo: 49603
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8702 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20299) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20299 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80350 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49603.1 | StrainInfo: A central database for resolving microbial strain identifiers |