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Strain identifier

BacDive ID: 11101

Type strain: No

Species: Nocardioides simplex

Strain history: IAM 1398 <-- H. Iizuka and K. Komagata P-18.

NCBI tax ID(s): 2045 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8702

BacDive-ID: 11101

DSM-Number: 20299

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardioides simplex DSM 20299 is a mesophilic bacterium that was isolated from Soil of petroleum zone.

NCBI tax id

  • NCBI tax id: 2045
  • Matching level: species

strain history

doi: 10.13145/bacdive11101.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Nocardioides
  • species: Nocardioides simplex
  • full scientific name: Nocardioides simplex (Jensen 1934) O'Donnell et al. 1983
  • synonyms

    @refsynonym
    20215Arthrobacter simplex
    20215Corynebacterium simplex
    20215Pimelobacter simplex

@ref: 8702

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides simplex

full scientific name: Nocardioides simplex (Jensen 1934) O'Donnell et al. 1983 emend. Nouioui et al. 2018

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8702
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8702positivegrowth28mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 8702
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil of petroleum zone
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_6659.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_452;97_518;98_4911;99_6659&stattab=map
  • Last taxonomy: Pimelobacter simplex
  • 16S sequence: AF005010
  • Sequence Identity:
  • Total samples: 374
  • soil counts: 197
  • aquatic counts: 68
  • animal counts: 61
  • plant counts: 48

Safety information

risk assessment

  • @ref: 8702
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Nocardioides simplex 16S ribosomal RNA gene, partial sequence
  • accession: AF005010
  • length: 1474
  • database: ena
  • NCBI tax ID: 2045

GC content

@refGC-contentmethod
870270.7
6777073.5thermal denaturation, midpoint method (Tm)
6777070.7thermal denaturation, midpoint method (Tm)

External links

@ref: 8702

culture collection no.: DSM 20299, IAM 1398, JCM 1366, IFO 12679, KCTC 9621, NBRC 12679

straininfo link

@refpassport
20218http://www.straininfo.net/strains/164072
20218http://www.straininfo.net/strains/164073

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8702Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20299)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20299
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta