Strain identifier
BacDive ID: 111
Type strain:
Species: Acidithiobacillus ferrooxidans
Strain history: <- D. P. Kelly, Univ. Warwick, Coventry, U.K. <- M. R. E. Porton <- M. G. Yates, John Hopkins University, Baltimore, USA <- W. W. Leathen, Mellon Institute, Pittsburgh, USA (Ferrobacillus ferrooxidans)
NCBI tax ID(s): 920 (species)
General
@ref: 300
BacDive-ID: 111
DSM-Number: 583
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acidithiobacillus ferrooxidans DSM 583 is a mesophilic bacterium that was isolated from coal mine effluent.
NCBI tax id
- NCBI tax id: 920
- Matching level: species
strain history
- @ref: 300
- history: <- D. P. Kelly, Univ. Warwick, Coventry, U.K. <- M. R. E. Porton <- M. G. Yates, John Hopkins University, Baltimore, USA <- W. W. Leathen, Mellon Institute, Pittsburgh, USA (Ferrobacillus ferrooxidans)
doi: 10.13145/bacdive111.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Acidithiobacillia
- order: Acidithiobacillales
- family: Acidithiobacillaceae
- genus: Acidithiobacillus
- species: Acidithiobacillus ferrooxidans
- full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
synonyms
- @ref: 20215
- synonym: Thiobacillus ferrooxidans
@ref: 300
domain: Bacteria
phylum: Proteobacteria
class: Acidithiobacillia
order: Acidithiobacillales
family: Acidithiobacillaceae
genus: Acidithiobacillus
species: Acidithiobacillus ferrooxidans
full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
type strain: no
Morphology
colony morphology
- @ref: 300
- incubation period: 3-7 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
300 | ACIDITHIOBACILLUS FERROOXIDANS MEDIUM (DSMZ Medium 70) | yes | https://mediadive.dsmz.de/medium/70 | Name: ACIDITHIOBACILLUS FERROOXIDANS MEDIUM (DSMZ Medium 70) Composition: FeSO4 x 7 H2O 33.3 g/l (NH4)2SO4 0.4 g/l MgSO4 x 7 H2O 0.4 g/l KH2PO4 0.4 g/l H2SO4 |
300 | LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium882.pdf |
culture temp
- @ref: 300
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 300
- sample type: coal mine effluent
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Industrial wastewater |
#Engineered | #Other | #Mine |
taxonmaps
- @ref: 69479
- File name: preview.99_1131.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_885;99_1131&stattab=map
- Last taxonomy: Acidithiobacillus
- 16S sequence: FN811931
- Sequence Identity:
- Total samples: 673
- soil counts: 100
- aquatic counts: 493
- animal counts: 74
- plant counts: 6
Safety information
risk assessment
- @ref: 300
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Acidithiobacillus ferrooxidans partial 16S rRNA gene, strain DSM583
- accession: FN811931
- length: 1422
- database: ena
- NCBI tax ID: 920
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acidithiobacillus ferridurans DSM 583 | GCA_018854535 | contig | ncbi | 1232575 |
66792 | Acidithiobacillus ferridurans strain DSM 583 | 1232575.21 | wgs | patric | 1232575 |
GC content
- @ref: 300
- GC-content: 58.0
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 81.088 | no |
gram-positive | no | 98.116 | no |
anaerobic | no | 95.595 | no |
aerobic | no | 85.223 | no |
halophile | no | 87.016 | no |
spore-forming | no | 94.295 | no |
glucose-util | yes | 54.996 | no |
flagellated | no | 98.276 | no |
thermophile | no | 98.43 | yes |
glucose-ferment | no | 86.888 | no |
External links
@ref: 300
culture collection no.: DSM 583
straininfo link
- @ref: 69794
- straininfo: 47228
literature
- topic: Enzymology
- Pubmed-ID: 9687454
- title: Enzyme-linked immunofiltration assay To estimate attachment of thiobacilli to pyrite
- authors: Dziurla MA, Achouak W, Lam BT, Heulin T, Berthelin J
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.64.8.2937-2942.1998
- year: 1998
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
300 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 583) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-583 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47228.1 | StrainInfo: A central database for resolving microbial strain identifiers |