Strain identifier

BacDive ID: 111

Type strain: No

Species: Acidithiobacillus ferrooxidans

Strain history: <- D. P. Kelly, Univ. Warwick, Coventry, U.K. <- M. R. E. Porton <- M. G. Yates, John Hopkins University, Baltimore, USA <- W. W. Leathen, Mellon Institute, Pittsburgh, USA (Ferrobacillus ferrooxidans)

NCBI tax ID(s): 920 (species)

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General

@ref: 300

BacDive-ID: 111

DSM-Number: 583

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Acidithiobacillus ferrooxidans DSM 583 is a mesophilic bacterium that was isolated from coal mine effluent.

NCBI tax id

  • NCBI tax id: 920
  • Matching level: species

strain history

  • @ref: 300
  • history: <- D. P. Kelly, Univ. Warwick, Coventry, U.K. <- M. R. E. Porton <- M. G. Yates, John Hopkins University, Baltimore, USA <- W. W. Leathen, Mellon Institute, Pittsburgh, USA (Ferrobacillus ferrooxidans)

doi: 10.13145/bacdive111.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Acidithiobacillia
  • order: Acidithiobacillales
  • family: Acidithiobacillaceae
  • genus: Acidithiobacillus
  • species: Acidithiobacillus ferrooxidans
  • full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000
  • synonyms

    • @ref: 20215
    • synonym: Thiobacillus ferrooxidans

@ref: 300

domain: Bacteria

phylum: Proteobacteria

class: Acidithiobacillia

order: Acidithiobacillales

family: Acidithiobacillaceae

genus: Acidithiobacillus

species: Acidithiobacillus ferrooxidans

full scientific name: Acidithiobacillus ferrooxidans (Temple and Colmer 1951) Kelly and Wood 2000

type strain: no

Morphology

colony morphology

  • @ref: 300
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
300ACIDITHIOBACILLUS FERROOXIDANS MEDIUM (DSMZ Medium 70)yeshttps://mediadive.dsmz.de/medium/70Name: ACIDITHIOBACILLUS FERROOXIDANS MEDIUM (DSMZ Medium 70) Composition: FeSO4 x 7 H2O 33.3 g/l (NH4)2SO4 0.4 g/l MgSO4 x 7 H2O 0.4 g/l KH2PO4 0.4 g/l H2SO4
300LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium882.pdf

culture temp

  • @ref: 300
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 300
  • sample type: coal mine effluent

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Industrial wastewater
#Engineered#Other#Mine

taxonmaps

  • @ref: 69479
  • File name: preview.99_1131.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_163;96_544;97_628;98_885;99_1131&stattab=map
  • Last taxonomy: Acidithiobacillus
  • 16S sequence: FN811931
  • Sequence Identity:
  • Total samples: 673
  • soil counts: 100
  • aquatic counts: 493
  • animal counts: 74
  • plant counts: 6

Safety information

risk assessment

  • @ref: 300
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Acidithiobacillus ferrooxidans partial 16S rRNA gene, strain DSM583
  • accession: FN811931
  • length: 1422
  • database: ena
  • NCBI tax ID: 920

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acidithiobacillus ferridurans DSM 583GCA_018854535contigncbi1232575
66792Acidithiobacillus ferridurans strain DSM 5831232575.21wgspatric1232575

GC content

  • @ref: 300
  • GC-content: 58.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno81.088no
gram-positiveno98.116no
anaerobicno95.595no
aerobicno85.223no
halophileno87.016no
spore-formingno94.295no
glucose-utilyes54.996no
flagellatedno98.276no
thermophileno98.43yes
glucose-fermentno86.888no

External links

@ref: 300

culture collection no.: DSM 583

straininfo link

  • @ref: 69794
  • straininfo: 47228

literature

  • topic: Enzymology
  • Pubmed-ID: 9687454
  • title: Enzyme-linked immunofiltration assay To estimate attachment of thiobacilli to pyrite
  • authors: Dziurla MA, Achouak W, Lam BT, Heulin T, Berthelin J
  • journal: Appl Environ Microbiol
  • DOI: 10.1128/AEM.64.8.2937-2942.1998
  • year: 1998

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
300Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 583)https://www.dsmz.de/collection/catalogue/details/culture/DSM-583
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69794Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47228.1StrainInfo: A central database for resolving microbial strain identifiers