Archive BacDiveID:10.13145/bacdive11084.20230509.8

Strain identifier

BacDive ID: 11084

Type strain:

Species: Marmoricola aurantiacus

Strain history: DSM 12652 <-- C. Urzì BC361.

NCBI tax ID(s): 86796 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4780

BacDive-ID: 11084

DSM-Number: 12652

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Marmoricola aurantiacus DSM 12652 is a mesophilic bacterium that was isolated from marble statue.

NCBI tax id

NCBI tax id: 86796
Matching level: species

strain history

@ref	history
4780	<- C. Urcì; BC 361
39566	2000, C Urzi, Sci. Fac., Messina, Italy: strain BC 361
67770	DSM 12652 <-- C. Urzì BC361.

doi: 10.13145/bacdive11084.20230509.8

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Propionibacteriales
family: Nocardioidaceae
genus: Marmoricola
species: Marmoricola aurantiacus
full scientific name: Marmoricola aurantiacus Urzì et al. 2000

@ref: 4780

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Marmoricola

species: Marmoricola aurantiacus

full scientific name: Marmoricola aurantiacus Urzì et al. 2000

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	90.6
69480		100	positive

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
4780	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39566	MEDIUM 359 - for Marmoricola genus	yes		Distilled water make up to (1000.000 ml);Sodium chloride (5.000 g);Agar(15.000 g);Glucose (10.000 g);Yeast extract (5.000 g);Malt extract (15.000 g);Starch maize (10.000 g);Calcium carbonate (2.000 g)
4780	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://mediadive.dsmz.de/medium/535	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
4780	positive	growth	28	mesophilic
39566	positive	growth	25	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 90.52

murein

@ref: 4780
murein short key: A41.01
type: A3gamma LL-Dpm-Gly

observation

@ref: 67770
observation: quinones: MK-8(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
4780	marble statue	München	Germany	DEU	Europe
67770	Marble statue (Wagmüller's monument) in the old Nordfriedhof cemetery	Munich	Germany	DEU	Europe

isolation source categories

Cat1: #Engineered

taxonmaps

@ref: 69479
File name: preview.99_2223.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_723;97_1424;98_1733;99_2223&stattab=map
Last taxonomy: Marmoricola aurantiacus
16S sequence: Y18629
Sequence Identity:
Total samples: 946
soil counts: 215
aquatic counts: 77
animal counts: 557
plant counts: 97

Safety information

risk assessment

@ref: 4780
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 4780
description: Marmoricola aurantiacus 16S rRNA gene, partial
accession: Y18629
length: 1497
database: ena
NCBI tax ID: 86796

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Marmoricola aurantiacus strain DSM 12652	86796.3	wgs	patric	86796
66792	Marmoricola aurantiacus DSM 12652	2781126051	draft	img	86796
67770	Marmoricola aurantiacus DSM 12652	GCA_003752505	contig	ncbi	86796

GC content

@ref: 4780
GC-content: 72
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
gram-positive	yes	100	yes
anaerobic	no	99.821	no
spore-forming	no	90.52	no
spore-forming	no	50	no
thermophile	no	98.742	no
motile	no	90.6	no

External links

@ref: 4780

culture collection no.: DSM 12652, JCM 10917, NBRC 105375, BC 361, CIP 106770, NCIMB 13748

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/163291
20218	http://www.straininfo.net/strains/152629

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	10758857	Marmoricola aurantiacus gen. nov., sp. nov., a coccoid member of the family Nocardioidaceae isolated from a marble statue.	Urzi C, Salamone P, Schumann P, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/00207713-50-2-529	2000	Actinomycetales/chemistry/classification/isolation & purification/physiology, Base Composition, Calcium Carbonate, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sculpture, Sequence Analysis, DNA	Cultivation
Phylogeny	17625163	Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64696-0	2007	Actinomycetales/chemistry/classification/isolation & purification/physiology, Aerobiosis, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Vitamin K 2/analysis	Genetics
Phylogeny	18450688	Marmoricola bigeumensis sp. nov., a member of the family Nocardioidaceae.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65576-0	2008	Actinomycetales/classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Species Specificity	Genetics
Phylogeny	19880634	Marmoricola scoriae sp. nov., isolated from volcanic ash.	Lee DW, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.018242-0	2009	Actinomycetales/classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Volcanic Eruptions/analysis	Metabolism
Phylogeny	20693360	Marmoricola korecus sp. nov.	Lee SD, Lee DW, Ko YH	Int J Syst Evol Microbiol	10.1099/ijs.0.025460-0	2010	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Volcanic Eruptions	Genetics
Phylogeny	25754550	Marmoricola solisilvae sp. nov. and Marmoricola terrae sp. nov., isolated from soil and emended description of the genus Marmoricola.	Kim SJ, Lim JM, Hamada M, Ahn JH, Weon HY, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.000184	2015	Actinomycetales/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
4780	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12652)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-12652
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
39566	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/18937
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)